Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 2
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G427300.1 | Wheat | cytosol | 77.61 | 99.05 |
| TraesCS7D01G056400.1 | Wheat | cytosol | 73.88 | 94.29 |
| TraesCS7A01G061500.1 | Wheat | cytosol | 73.88 | 94.29 |
| Os02t0269200-01 | Rice | cytosol | 65.67 | 88.89 |
| EES06648 | Sorghum | cytosol | 64.18 | 86.87 |
| Zm00001d016016_P001 | Maize | cytosol | 70.9 | 79.17 |
| GSMUA_Achr7P25190_001 | Banana | cytosol | 50.0 | 72.04 |
| CDY02551 | Canola | cytosol | 50.0 | 71.28 |
| AT1G52245.1 | Thale cress | cytosol | 50.0 | 71.28 |
| Bra014318.1-P | Field mustard | cytosol | 50.0 | 71.28 |
| Bra018957.1-P | Field mustard | cytosol | 49.25 | 70.21 |
| CDY30135 | Canola | cytosol | 48.51 | 69.89 |
| Bra027190.1-P | Field mustard | cytosol | 48.51 | 69.89 |
| CDX97722 | Canola | cytosol | 48.51 | 69.89 |
| TraesCS3A01G305600.1 | Wheat | cytosol | 51.49 | 69.7 |
| KRH09878 | Soybean | cytosol | 48.51 | 68.42 |
| Solyc12g044240.1.1 | Tomato | cytosol | 47.76 | 68.09 |
| AT3G16120.1 | Thale cress | cytosol | 47.01 | 67.74 |
| KRH23441 | Soybean | cytosol | 47.76 | 67.37 |
| PGSC0003DMT400019607 | Potato | cytosol | 47.01 | 67.02 |
| Solyc03g120690.2.1 | Tomato | cytosol | 46.27 | 65.96 |
| KRH60274 | Soybean | cytosol | 45.52 | 65.59 |
| PGSC0003DMT400006527 | Potato | cytosol | 45.52 | 64.89 |
| TraesCS2A01G245600.1 | Wheat | cytosol | 47.76 | 64.65 |
| KRH41561 | Soybean | cytosol | 44.78 | 64.52 |
| VIT_09s0002g04280.t01 | Wine grape | cytosol | 45.52 | 64.21 |
| VIT_11s0016g03770.t01 | Wine grape | cytosol | 44.78 | 62.5 |
| HORVU7Hr1G011400.2 | Barley | plastid | 75.37 | 62.35 |
| TraesCS7A01G284100.1 | Wheat | cytosol, plastid | 39.55 | 60.92 |
| CDY47528 | Canola | cytosol | 44.78 | 46.15 |
| TraesCS6A01G295200.1 | Wheat | cytosol | 25.37 | 22.97 |
| TraesCS3A01G175300.1 | Wheat | cytosol | 22.39 | 21.28 |
| TraesCS2A01G337200.1 | Wheat | cytosol | 26.87 | 20.57 |
Protein Annotations
| Gene3D:3.30.740.10 | MapMan:35.2 | InterPro:DLC_sf | InterPro:Dynein_light_chain_typ-1/2 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005856 | GO:GO:0007017 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0030286 |
| InterPro:IPR037177 | PFAM:PF01221 | PANTHER:PTHR11886 | PANTHER:PTHR11886:SF48 | SMART:SM01375 | SUPFAM:SSF54648 |
| EnsemblPlantsGene:TraesCS4A01G428300 | EnsemblPlants:TraesCS4A01G428300.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr4A:+:699004383..699004787
Molecular Weight (calculated)
14572.3 Da
IEP (calculated)
6.080
GRAVY (calculated)
0.119
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MLEGKAVVED TDMPARMQAA ATSAASRALD LFDVDDCRAI AGHIKTVRHP STRPSPHLSI DWFVVAEDPS FPRVQEFDRR YGVGWQCVVG ASFGCFFTHS
101: SGTFIYFSLE RLTFLLFKAA AVAAAASCDT SGMS
101: SGTFIYFSLE RLTFLLFKAA AVAAAASCDT SGMS
1: MLEGKAMVED SDMPVKMQMQ AMAFASQALD LFDVFDCKSI AGHIKKEFDE RYGSGWQCVV GSNFGCFFTH SKGTFIYFQL ETLKFLIFKG ASTP
Arabidopsis Description
At1g52250 [Source:UniProtKB/TrEMBL;Acc:Q9M810]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.