Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G108700.2 | Wheat | nucleus | 83.87 | 83.63 |
| TraesCS6B01G146800.2 | Wheat | nucleus | 81.23 | 80.99 |
| HORVU6Hr1G021570.1 | Barley | nucleus | 58.94 | 59.64 |
| GSMUA_Achr2P04520_001 | Banana | nucleus | 24.63 | 51.85 |
| Os02t0148500-01 | Rice | nucleus | 48.97 | 50.91 |
| GSMUA_Achr3P05620_001 | Banana | nucleus | 35.48 | 48.4 |
| GSMUA_Achr9P13870_001 | Banana | nucleus | 39.59 | 44.55 |
| Bra014292.1-P | Field mustard | nucleus | 31.96 | 41.92 |
| CDY46552 | Canola | nucleus | 31.67 | 41.38 |
| VIT_09s0054g00440.t01 | Wine grape | nucleus | 34.31 | 39.13 |
| GSMUA_Achr10P... | Banana | nucleus | 36.36 | 38.15 |
| TraesCS4A01G249400.1 | Wheat | nucleus | 29.91 | 37.78 |
| AT1G51600.1 | Thale cress | nucleus | 33.43 | 37.75 |
| CDY50073 | Canola | nucleus | 31.67 | 37.5 |
| CDY19576 | Canola | nucleus | 31.96 | 36.45 |
| AT3G21175.1 | Thale cress | nucleus | 31.67 | 36.36 |
| CDY52949 | Canola | nucleus | 31.09 | 35.81 |
| TraesCS7A01G423100.2 | Wheat | nucleus | 41.35 | 35.52 |
| TraesCS4A01G285900.2 | Wheat | nucleus | 33.14 | 35.42 |
| KRH44616 | Soybean | extracellular, vacuole | 33.72 | 34.43 |
| Bra031258.1-P | Field mustard | nucleus | 31.96 | 33.96 |
| Bra023900.1-P | Field mustard | nucleus | 30.79 | 28.93 |
| CDY37312 | Canola | cytosol, nucleus, plastid | 30.5 | 28.34 |
| CDY27538 | Canola | nucleus | 30.79 | 27.2 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | InterPro:CCT_domain | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR000679 | InterPro:IPR010399 |
| InterPro:IPR010402 | InterPro:IPR013088 | PFAM:PF00320 | PFAM:PF06200 | PFAM:PF06203 | ScanProsite:PS00344 |
| PFscan:PS51017 | PFscan:PS51320 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF296 | SMART:SM00401 | SMART:SM00979 |
| SUPFAM:SSF57716 | InterPro:Tify_dom | EnsemblPlantsGene:TraesCS6A01G118800 | EnsemblPlants:TraesCS6A01G118800.2 | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA |
| TIGR:cd00202 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6A:+:89892057..89895197
Molecular Weight (calculated)
36174.9 Da
IEP (calculated)
5.093
GRAVY (calculated)
-0.729
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGHHDASKP YQPRRGPERP PPQQPAEDEE AAAAAAAMAE VEAAAGAMEQ YEPHLEHGEE EEEEEGEEEG EEEGEEGHGY AYDYVTGEAV PMDEEGAAAA
101: AHAHHGAAGP HGMEAGGAPQ APSNTLTLSF QGEVFVFESV SAEKVQAVLL LLGGRELGPG MGVGPSSSAS YSKRLNSHRM ASLMRFREKR KERNFDKKIR
201: YSVRKEVAHR MQRHKGQFTS SKAKAEEAAA AANSDWGAVE GRPLSAPVCQ HCGISSNNTP MMRRGPDGPR TLCNACGLAW ANKGMMREVK GHTPLKVVPP
301: ATDDAQNGVA EAPTAEQQHL ALEAAPEAPV APAPAANGHD S
101: AHAHHGAAGP HGMEAGGAPQ APSNTLTLSF QGEVFVFESV SAEKVQAVLL LLGGRELGPG MGVGPSSSAS YSKRLNSHRM ASLMRFREKR KERNFDKKIR
201: YSVRKEVAHR MQRHKGQFTS SKAKAEEAAA AANSDWGAVE GRPLSAPVCQ HCGISSNNTP MMRRGPDGPR TLCNACGLAW ANKGMMREVK GHTPLKVVPP
301: ATDDAQNGVA EAPTAEQQHL ALEAAPEAPV APAPAANGHD S
001: MDDLHGSNAR MHIREAQDPM HVQFEHHALH HIHNGSGMVD DQADDGNAGG MSEGVETDIP SHPGNVTDNR GEVVDRGSEQ GDQLTLSFQG QVYVFDSVLP
101: EKVQAVLLLL GGRELPQAAP PGLGSPHQNN RVSSLPGTPQ RFSIPQRLAS LVRFREKRKG RNFDKKIRYT VRKEVALRMQ RNKGQFTSAK SNNDEAASAG
201: SSWGSNQTWA IESSEAQHQE ISCRHCGIGE KSTPMMRRGP AGPRTLCNAC GLMWANKGAF RDLSKASPQT AQNLPLNKNE DANLETDHQI MITVANDISN
301: SQ
101: EKVQAVLLLL GGRELPQAAP PGLGSPHQNN RVSSLPGTPQ RFSIPQRLAS LVRFREKRKG RNFDKKIRYT VRKEVALRMQ RNKGQFTSAK SNNDEAASAG
201: SSWGSNQTWA IESSEAQHQE ISCRHCGIGE KSTPMMRRGP AGPRTLCNAC GLMWANKGAF RDLSKASPQT AQNLPLNKNE DANLETDHQI MITVANDISN
301: SQ
Arabidopsis Description
GATA28GATA transcription factor 28 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1G0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.