CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY08148
CDY19576
CDY24801
CDY27538
CDY35449
CDY37312
CDY50073

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21175.1	CDY19576	AT3G21175.1	21798944
AT3G21175.1	CDY27538	AT3G21175.1	21798944
AT3G21175.1	CDY37312	AT3G21175.1	21798944
AT3G21175.1	CDY50073	AT3G21175.1	21798944
AT3G21175.1	CDY08148	AT3G49580.1	21798944
AT3G21175.1	CDY24801	AT4G23770.1	21798944
AT3G21175.1	CDY35449	AT4G23770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19576	Canola	nucleus	73.61	70.9
AT3G21175.1	Thale cress	nucleus	67.71	65.66
CDY46552	Canola	nucleus	56.25	62.07
CDY52949	Canola	nucleus	59.03	57.43
GSMUA_Achr2P04520_001	Banana	nucleus	29.51	52.47
CDY37312	Canola	cytosol, nucleus, plastid	62.15	48.77
CDY27538	Canola	nucleus	64.93	48.45
VIT_09s0054g00440.t01	Wine grape	nucleus	46.53	44.82
GSMUA_Achr3P05620_001	Banana	nucleus	38.54	44.4
KRH44616	Soybean	extracellular, vacuole	48.96	42.22
GSMUA_Achr9P13870_001	Banana	nucleus	43.4	41.25
CDX92633	Canola	nucleus	36.46	40.54
CDY57283	Canola	nucleus	14.58	39.25
CDY11013	Canola	nucleus	35.42	39.08
GSMUA_Achr10P...	Banana	nucleus	42.36	37.54
EER88899	Sorghum	nucleus	44.1	36.08
Os02t0148500-01	Rice	nucleus	40.62	35.67
CDY56573	Canola	nucleus	37.5	35.18
Zm00001d014656_P003	Maize	nucleus	42.36	34.08
CDY61010	Canola	nucleus	36.46	33.87
Zm00001d036494_P001	Maize	nucleus	39.58	31.84
TraesCS6A01G118800.2	Wheat	nucleus	37.5	31.67
TraesCS7A01G423100.2	Wheat	nucleus	43.4	31.49
HORVU6Hr1G021570.1	Barley	nucleus	36.46	31.16
TraesCS6D01G108700.2	Wheat	nucleus	36.46	30.7
TraesCS7B01G323600.1	Wheat	nucleus	41.32	30.51
TraesCS7D01G416000.2	Wheat	nucleus	41.32	30.51
TraesCS6B01G146800.2	Wheat	nucleus	36.11	30.41
HORVU7Hr1G097840.6	Barley	nucleus	42.01	25.85

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	GO:A0A078IM27	UniProt:A0A078IM27	InterPro:CCT_domain	EnsemblPlants:CDY50073
ProteinID:CDY50073	ProteinID:CDY50073.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00095845001	InterPro:IPR000679	InterPro:IPR010399
InterPro:IPR010402	InterPro:IPR013088	PFAM:PF00320	PFAM:PF06200	PFAM:PF06203	ScanProsite:PS00344
PFscan:PS50114	PFscan:PS51017	PFscan:PS51320	PANTHER:PTHR10071	PANTHER:PTHR10071:SF282	SMART:SM00401
SMART:SM00979	SUPFAM:SSF57716	InterPro:Tify_dom	UniParc:UPI0004EBFCD2	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA

Description

BnaC05g30820DBnaC05g30820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IM27]

Coordinates

chrLK032878:-:64237..66787

Molecular Weight (calculated)

31582.0 Da

IEP (calculated)

6.584

GRAVY (calculated)

-0.866

Length

288 amino acids

Sequence
(BLAST)

001: MDDDGLHGNN GGMHSGGDEL PMHVQYEHHG MMDEHADDGM NGGLETDIPS HLGNPSDHRG EVVDRGGENG DQLTLSYQGQ VYVFDHVLPE KVQAVLLLLG
101: GREVPQTLPT TVGSPHQNNR GLSGTPQRFS APQRQASLLR FREKRKGRNF DKTIRYTVRK EVALRMQRKK GQFTSAKSSN EESALTGPDW GSGQSWALEG
201: CETQKPEALC RHCGTSENST PMMRRGPEGP RTLCNACGLM WANKGALRDL SKAPPPQITR NLPTNKNDES NLEADQMMVV AGDISNSN

Best Arabidopsis Sequence Match ( AT3G21175.2 )
(BLAST)

001: MDDLHGRNGR MHIGVAQNPM HVQYEDHGLH HIDNENSMMD DHADGGMDEG VETDIPSHPG NSADNRGEVV DRGIENGDQL TLSFQGQVYV FDRVSPEKVQ
101: AVLLLLGGRE VPHTLPTTLG SPHQNNRGLS GTPQRLSVPQ RLASLLRFRE KRKGRNFDKT IRYTVRKEVA LRMQRKKGQF TSAKSSNDDS GSTGSDWGSN
201: QSWAVEGTET QKPEVLCRHC GTSEKSTPMM RRGPDGPRTL CNACGLMWAN KGTLRDLSKV PPPQTPQHLS LNKNEDANLE ADQMMEVTGD ISNTQ

Arabidopsis Description

GATA24GATA transcription factor 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.