Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G416000.2 | Wheat | nucleus | 89.49 | 89.49 |
| TraesCS7A01G423100.2 | Wheat | nucleus | 75.13 | 73.8 |
| HORVU7Hr1G097840.6 | Barley | nucleus | 82.82 | 69.02 |
| GSMUA_Achr2P04520_001 | Banana | nucleus | 25.64 | 61.73 |
| GSMUA_Achr3P05620_001 | Banana | nucleus | 37.69 | 58.8 |
| GSMUA_Achr9P13870_001 | Banana | nucleus | 40.26 | 51.82 |
| EER88899 | Sorghum | nucleus | 46.41 | 51.42 |
| Zm00001d014656_P003 | Maize | nucleus | 46.15 | 50.28 |
| Zm00001d036494_P001 | Maize | nucleus | 45.38 | 49.44 |
| Bra014292.1-P | Field mustard | nucleus | 30.26 | 45.38 |
| CDY46552 | Canola | nucleus | 29.74 | 44.44 |
| GSMUA_Achr10P... | Banana | nucleus | 36.41 | 43.69 |
| VIT_09s0054g00440.t01 | Wine grape | nucleus | 33.33 | 43.48 |
| CDY19576 | Canola | nucleus | 33.08 | 43.14 |
| AT1G51600.1 | Thale cress | nucleus | 32.56 | 42.05 |
| AT3G21175.1 | Thale cress | nucleus | 31.79 | 41.75 |
| CDY50073 | Canola | nucleus | 30.51 | 41.32 |
| Bra031258.1-P | Field mustard | nucleus | 33.08 | 40.19 |
| TraesCS6B01G146800.2 | Wheat | nucleus | 34.87 | 39.77 |
| KRH44616 | Soybean | extracellular, vacuole | 33.08 | 38.62 |
| TraesCS4B01G065300.1 | Wheat | nucleus | 26.41 | 38.29 |
| CDY52949 | Canola | nucleus | 28.46 | 37.5 |
| Bra023900.1-P | Field mustard | nucleus | 31.79 | 34.16 |
| CDY37312 | Canola | cytosol, nucleus, plastid | 31.54 | 33.52 |
| CDY27538 | Canola | nucleus | 31.79 | 32.12 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | InterPro:CCT_domain | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR000679 |
| InterPro:IPR010399 | InterPro:IPR010402 | InterPro:IPR013088 | PFAM:PF00320 | PFAM:PF06200 | PFAM:PF06203 |
| ScanProsite:PS00344 | PFscan:PS50114 | PFscan:PS51017 | PFscan:PS51320 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF296 |
| SMART:SM00401 | SMART:SM00979 | SUPFAM:SSF57716 | InterPro:Tify_dom | EnsemblPlantsGene:TraesCS7B01G323600 | EnsemblPlants:TraesCS7B01G323600.1 |
| InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | TIGR:cd00202 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr7B:+:575366843..575373216
Molecular Weight (calculated)
41275.4 Da
IEP (calculated)
4.546
GRAVY (calculated)
-0.768
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQHDGKPYQ PRRGPERPPQ PAEDPPAPAA APAAADAVID HLAAVAAEAE ALNASIAAVA AEAEAMNAYE HAQEQEQEME EEEEEEEEEE EEEMEEDDDE
101: GEGDGQHEHG QHGGNGESVP MDAEAAAQAA AAAAACAPLD PHGAMVSGIV PPATGNQLTL SFQGEVYVFD SVSPDKVQAV LLLLGGRELN PGIGAGASST
201: PYSKRLNFPH RVASLMRFRE KRKERNFDKK IRYTVRKEVA LRMQRNRGQF TSSKPKPDDG TSELATADGS PNWGSVEGRP PSAAACHHCG TNAHNTPMMR
301: RGPEGPRTLC NACGLMWANK GMLRDLSKST PPSLQMVSTG PNDSNGNTLS QQNGSTLSQQ NGNAAIVPFA EQQNPAPASD ANGHGHGSST
101: GEGDGQHEHG QHGGNGESVP MDAEAAAQAA AAAAACAPLD PHGAMVSGIV PPATGNQLTL SFQGEVYVFD SVSPDKVQAV LLLLGGRELN PGIGAGASST
201: PYSKRLNFPH RVASLMRFRE KRKERNFDKK IRYTVRKEVA LRMQRNRGQF TSSKPKPDDG TSELATADGS PNWGSVEGRP PSAAACHHCG TNAHNTPMMR
301: RGPEGPRTLC NACGLMWANK GMLRDLSKST PPSLQMVSTG PNDSNGNTLS QQNGSTLSQQ NGNAAIVPFA EQQNPAPASD ANGHGHGSST
001: MDDLHGRNGR MHIGVAQNPM HVQYEDHGLH HIDNENSMMD DHADGGMDEG VETDIPSHPG NSADNRGEVV DRGIENGDQL TLSFQGQVYV FDRVSPEKVQ
101: AVLLLLGGRE VPHTLPTTLG SPHQNNRGLS GTPQRLSVPQ RLASLLRFRE KRKGRNFDKT IRYTVRKEVA LRMQRKKGQF TSAKSSNDDS GSTGSDWGSN
201: QSWAVEGTET QKPEVLCRHC GTSEKSTPMM RRGPDGPRTL CNACGLMWAN KGTLRDLSKV PPPQTPQHLS LNKNEDANLE ADQMMEVTGD ISNTQ
101: AVLLLLGGRE VPHTLPTTLG SPHQNNRGLS GTPQRLSVPQ RLASLLRFRE KRKGRNFDKT IRYTVRKEVA LRMQRKKGQF TSAKSSNDDS GSTGSDWGSN
201: QSWAVEGTET QKPEVLCRHC GTSEKSTPMM RRGPDGPRTL CNACGLMWAN KGTLRDLSKV PPPQTPQHLS LNKNEDANLE ADQMMEVTGD ISNTQ
Arabidopsis Description
GATA24GATA transcription factor 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.