Subcellular Localization
min:
: max
Winner_takes_all: golgi, plastid, extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G223200.1 | Wheat | cytosol, nucleus, plastid | 75.96 | 100.0 |
| TraesCS1D01G224800.1 | Wheat | cytosol, nucleus, plastid | 75.48 | 99.37 |
| HORVU1Hr1G060100.2 | Barley | cytosol, nucleus, plastid | 70.19 | 94.19 |
| EES18037 | Sorghum | cytosol | 57.69 | 62.83 |
| Os05t0351500-01 | Rice | cytosol | 56.25 | 62.57 |
| Zm00001d038002_P001 | Maize | nucleus | 58.65 | 55.96 |
| Bra006753.1-P | Field mustard | mitochondrion | 16.83 | 53.03 |
| VIT_06s0004g06970.t01 | Wine grape | cytosol | 41.35 | 51.19 |
| GSMUA_Achr5P28120_001 | Banana | mitochondrion | 19.23 | 50.0 |
| PGSC0003DMT400078237 | Potato | nucleus | 40.87 | 48.3 |
| CDY65780 | Canola | cytosol, nucleus, plastid | 37.02 | 47.83 |
| KRH30221 | Soybean | cytosol | 41.35 | 47.51 |
| AT5G58575.1 | Thale cress | cytosol, nucleus, plastid | 40.38 | 46.41 |
| KRG98249 | Soybean | endoplasmic reticulum, plasma membrane | 38.94 | 41.97 |
| Solyc06g082160.2.1 | Tomato | plastid | 40.87 | 25.3 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G236500.1 | EnsemblPlantsGene:TraesCS1B01G236500 | Gene3D:3.30.160.60 | InterPro:SAGA_su_Sgf11 | PANTHER:PTHR15117 | PANTHER:PTHR15117:SF22 |
| PFAM:PF08209 | SEG:seg | MapMan:15.3.4.2.1 | : | : | : |
Description
No Description!
Coordinates
chr1B:+:423639463..423642625
Molecular Weight (calculated)
22200.1 Da
IEP (calculated)
7.471
GRAVY (calculated)
-0.395
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MTARYRIVLQ PPGALLLFPL TLFLCSATRG WWRTAIEQNP STQIGNQSAA MSSSNDAPVS PRSQLVLSCF EELLDFAVAD VASECHRIAR LGLDRSVDAE
101: EEELRLWAAR VAGDHPGAED GATRGAGGGG GNKGAPDVFG QTHPAIAADV VDCMNCGRPV VAGRFAPHLE KCMGKGRKAR AKTTRSSTAG RNRNSNGEEH
201: SNHTFQES
101: EEELRLWAAR VAGDHPGAED GATRGAGGGG GNKGAPDVFG QTHPAIAADV VDCMNCGRPV VAGRFAPHLE KCMGKGRKAR AKTTRSSTAG RNRNSNGEEH
201: SNHTFQES
001: MSGAEDNKSS HAQLSSQIFL DLVDSVIADV ASECHRVARL GLDRDLDIVE EELRLSVEAR AKIADPSNNL ETNTKYVVDI FGQTHPPVAS EVFNCMNCGR
101: QIVAGRFAPH LEKCMGKGRK ARAKTTRSTT AAQNRNARRS PNPRYSPYPN SASENQLASG SPGVAGEDCS NFTVRENVKG D
101: QIVAGRFAPH LEKCMGKGRK ARAKTTRSTT AAQNRNARRS PNPRYSPYPN SASENQLASG SPGVAGEDCS NFTVRENVKG D
Arabidopsis Description
SAGA-associated factor 11 [Source:UniProtKB/TrEMBL;Acc:Q94BV2]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.