Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 4
- plastid 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006753.1-P | Field mustard | mitochondrion | 43.75 | 53.03 |
| VIT_06s0004g06970.t01 | Wine grape | cytosol | 70.0 | 33.33 |
| KRH30221 | Soybean | cytosol | 66.25 | 29.28 |
| PGSC0003DMT400078237 | Potato | nucleus | 58.75 | 26.7 |
| TraesCS1A01G223200.1 | Wheat | cytosol, nucleus, plastid | 50.0 | 25.32 |
| TraesCS1D01G224800.1 | Wheat | cytosol, nucleus, plastid | 50.0 | 25.32 |
| HORVU1Hr1G060100.2 | Barley | cytosol, nucleus, plastid | 48.75 | 25.16 |
| Os05t0351500-01 | Rice | cytosol | 58.75 | 25.13 |
| KRG98249 | Soybean | endoplasmic reticulum, plasma membrane | 60.0 | 24.87 |
| AT5G58575.1 | Thale cress | cytosol, nucleus, plastid | 56.25 | 24.86 |
| EES18037 | Sorghum | cytosol | 56.25 | 23.56 |
| CDY65780 | Canola | cytosol, nucleus, plastid | 42.5 | 21.12 |
| Zm00001d038002_P001 | Maize | nucleus | 57.5 | 21.1 |
| TraesCS1B01G236500.1 | Wheat | extracellular, golgi, plastid | 50.0 | 19.23 |
| Solyc06g082160.2.1 | Tomato | plastid | 58.75 | 13.99 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P28120_001 | EnsemblPlants:GSMUA_Achr5T28120_001 | EnsemblPlantsGene:GSMUA_Achr5G28120_001 | Gene3D:3.30.160.60 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | InterPro:SAGA_su_Sgf11 | PANTHER:PTHR15117 | PANTHER:PTHR15117:SF22 | PFAM:PF08209 |
| UniParc:UPI00029676F2 | UniProt:M0T2D6 | MapMan:15.3.4.2.1 | : | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G28120_001]
Coordinates
chr5:+:28455288..28455794
Molecular Weight (calculated)
8726.2 Da
IEP (calculated)
9.942
GRAVY (calculated)
-0.912
Length
80 amino acids
Sequence
(BLAST)
(BLAST)
1: MNCGRPVTAG RFAPHLEKCM GKGRKACTKA TRSSTIARNR HSRGSPVTVY APYSNATNSN RVPNGTTAGE EYTDYTFEEP
001: MSGAEDNKSS HAQLSSQIFL DLVDSVIADV ASECHRVARL GLDRDLDIVE EELRLSVEAR AKIADPSNNL ETNTKYVVDI FGQTHPPVAS EVFNCMNCGR
101: QIVAGRFAPH LEKCMGKGRK ARAKTTRSTT AAQNRNARRS PNPRYSPYPN SASENQLASG SPGVAGEDCS NFTVRENVKG D
101: QIVAGRFAPH LEKCMGKGRK ARAKTTRSTT AAQNRNARRS PNPRYSPYPN SASENQLASG SPGVAGEDCS NFTVRENVKG D
Arabidopsis Description
SAGA-associated factor 11 [Source:UniProtKB/TrEMBL;Acc:Q94BV2]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.