Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr4P32570_001 | |
| GSMUA_Achr6P24690_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G56250.1 | GSMUA_Achr4P32570_001 | AT1G49850.1 | 21798944 |
| AT5G56250.1 | GSMUA_Achr6P24690_001 | AT1G49850.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P01620_001 | Banana | nucleus | 43.94 | 38.04 |
| GSMUA_Achr5P04160_001 | Banana | nucleus | 32.0 | 37.74 |
| GSMUA_Achr9P12690_001 | Banana | nucleus | 41.66 | 36.16 |
| Os04t0471400-01 | Rice | nucleus | 29.81 | 26.39 |
| GSMUA_Achr10P... | Banana | nucleus | 26.98 | 26.22 |
| GSMUA_Achr3P10940_001 | Banana | nucleus | 31.18 | 26.15 |
| Zm00001d025668_P005 | Maize | nucleus | 29.26 | 25.91 |
| OQU81762 | Sorghum | nucleus | 28.99 | 25.73 |
| Zm00001d003333_P005 | Maize | nucleus | 28.71 | 25.42 |
| GSMUA_Achr7P20270_001 | Banana | nucleus | 30.26 | 25.23 |
| TraesCS2A01G330900.1 | Wheat | nucleus | 27.53 | 24.43 |
| TraesCS2D01G332100.1 | Wheat | nucleus | 27.44 | 24.37 |
| TraesCS2B01G351400.1 | Wheat | nucleus | 27.35 | 24.33 |
| CDY06514 | Canola | nucleus, plastid | 14.86 | 23.66 |
| Bra035611.1-P | Field mustard | nucleus, plastid | 15.68 | 23.59 |
| CDY20740 | Canola | plastid | 15.68 | 23.27 |
| AT5G56250.1 | Thale cress | nucleus | 16.86 | 22.81 |
| CDY36785 | Canola | nucleus | 12.03 | 22.76 |
| CDY36786 | Canola | nucleus, plastid | 14.4 | 20.98 |
| Bra028941.1-P | Field mustard | nucleus, plastid | 14.4 | 20.98 |
| CDY62101 | Canola | nucleus | 12.85 | 20.61 |
| CDY11951 | Canola | nucleus, plastid | 16.59 | 20.4 |
| CDY11950 | Canola | nucleus | 14.13 | 20.39 |
| CDY36783 | Canola | cytosol | 2.19 | 20.17 |
| Bra002831.1-P | Field mustard | nucleus | 10.76 | 19.67 |
| CDY32802 | Canola | nucleus | 10.76 | 19.67 |
| CDY17406 | Canola | nucleus, plastid | 16.59 | 19.51 |
| CDY06515 | Canola | nucleus, plastid | 15.95 | 19.36 |
| CDY32803 | Canola | nucleus | 16.41 | 18.95 |
| Bra002832.1-P | Field mustard | nucleus | 16.59 | 18.78 |
| Bra028942.1-P | Field mustard | nucleus | 16.41 | 18.77 |
| AT5G56240.3 | Thale cress | nucleus | 16.86 | 18.74 |
| Solyc07g066200.2.1 | Tomato | nucleus | 22.24 | 18.21 |
| Bra035610.1-P | Field mustard | nucleus, plastid | 15.86 | 18.16 |
| VIT_19s0015g01810.t01 | Wine grape | nucleus | 22.42 | 17.69 |
| CDY65749 | Canola | nucleus | 14.04 | 17.46 |
| PGSC0003DMT400056953 | Potato | nucleus | 22.06 | 17.35 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P03510_001 | EnsemblPlants:GSMUA_Achr10T03510_001 | EnsemblPlantsGene:GSMUA_Achr10G03510_001 | ncoils:Coil | PANTHER:PTHR35767 | SEG:seg |
| UniParc:UPI000294B894 | UniProt:M0RF28 | MapMan:35.2 | : | : | : |
Description
Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G03510_001]
Coordinates
chr10:-:11441930..11447177
Molecular Weight (calculated)
121489.0 Da
IEP (calculated)
8.473
GRAVY (calculated)
-0.653
Length
1097 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLSTKNSPDP SCSSHLPAPR TGESASQTLA FQERNPILEE TPTPNFSIRD YVFASRTKGL ETSWPFAQHF LRLCFKDGVK GLLPPFEPPN LLRVQCRRKE
0101: VEQILAHIVD PQEEKQSCDR KTRTCQEISK DDLAHCDAGV RLIRTHEQVE TSSYDIGNQE SKTPATDIEN KCRLIVKLGV ISGSSRTEDT ISDSSTVSDP
0201: MASKVCPVCR TFSSTSNTTL NAHIDQCLSM ESNTKWMSSK LSKPTEKPRK KRLMVDIYAT APRCTLEDLD KRNGTNWANE MAFATAPTVE VDMETKKPKL
0301: SPTESTAYVE GSVSVNSAGA KLKILSKFND MPKLKEGPKF QKHEEVIEPT KMFLVSKKKH LNAKFSRKMK VKAQRNKLSS RTLLKAQIQT AHEGYCNAKT
0401: HHENEESLNP GNLNKSSSSL RQLMCSRRSD LPKNLFRKNV KRASDNTVPL TRSRLTSEDL VSSPKRVHSA GDGFEDSEKL SIPTFKWSSE STVKNGILLR
0501: KPKSSGNSVA SSGIKIKEID LSIQHQSDNS SRRTNISLEI CHRPLIKDPI KLILKKKDSA GRTSSTSEVR KGDLKDKLFS FDKFRKHRSV SRSGKNEERD
0601: DRSTMEEQNH GDECHGPDVE NLNMQVEVFH SGHCVIKSSK EISTANPSPN DIVSSGNLQA SFGARLDPSP LVEQVQYISK REFHEKQLEY TVDTMSIQES
0701: SGCLTNGDVG PRIPERSTSV TSVRTIVDDA MNLASDGEPS GSPVSTASTL FVPSSIDSKY TDPENEALGI VVNVEDKLAL MERNVEGRNQ ELKANLSAKE
0801: PSQSVNDEPF YSSCRESLSR ESQSLRSNAT QHRTTIGKQV PDLFPGPRIS SSFSLYQNPR TNTMVSSTST ETLSDSAVKV PSCTGANPIL RLMGKNLMVM
0901: KNEEFVPPST VMDHPPDVNL SSHLGFSSAN THMKQQNFPG TVAEHQFPVC LPSTAVAGFS FTSLHAALVP RPNQQTQEKN AYKKFDSSAT PCMMNEVIVI
1001: DDSPKTDKQP SLSSPTSTLP FDASSLNPLS QRSFSCLSSQ DHIEDPPSGM RPLLPNLYTG VDASLIKRYS TAEGHFMFQS PGTAYMRPSI CYSQTLH
0101: VEQILAHIVD PQEEKQSCDR KTRTCQEISK DDLAHCDAGV RLIRTHEQVE TSSYDIGNQE SKTPATDIEN KCRLIVKLGV ISGSSRTEDT ISDSSTVSDP
0201: MASKVCPVCR TFSSTSNTTL NAHIDQCLSM ESNTKWMSSK LSKPTEKPRK KRLMVDIYAT APRCTLEDLD KRNGTNWANE MAFATAPTVE VDMETKKPKL
0301: SPTESTAYVE GSVSVNSAGA KLKILSKFND MPKLKEGPKF QKHEEVIEPT KMFLVSKKKH LNAKFSRKMK VKAQRNKLSS RTLLKAQIQT AHEGYCNAKT
0401: HHENEESLNP GNLNKSSSSL RQLMCSRRSD LPKNLFRKNV KRASDNTVPL TRSRLTSEDL VSSPKRVHSA GDGFEDSEKL SIPTFKWSSE STVKNGILLR
0501: KPKSSGNSVA SSGIKIKEID LSIQHQSDNS SRRTNISLEI CHRPLIKDPI KLILKKKDSA GRTSSTSEVR KGDLKDKLFS FDKFRKHRSV SRSGKNEERD
0601: DRSTMEEQNH GDECHGPDVE NLNMQVEVFH SGHCVIKSSK EISTANPSPN DIVSSGNLQA SFGARLDPSP LVEQVQYISK REFHEKQLEY TVDTMSIQES
0701: SGCLTNGDVG PRIPERSTSV TSVRTIVDDA MNLASDGEPS GSPVSTASTL FVPSSIDSKY TDPENEALGI VVNVEDKLAL MERNVEGRNQ ELKANLSAKE
0801: PSQSVNDEPF YSSCRESLSR ESQSLRSNAT QHRTTIGKQV PDLFPGPRIS SSFSLYQNPR TNTMVSSTST ETLSDSAVKV PSCTGANPIL RLMGKNLMVM
0901: KNEEFVPPST VMDHPPDVNL SSHLGFSSAN THMKQQNFPG TVAEHQFPVC LPSTAVAGFS FTSLHAALVP RPNQQTQEKN AYKKFDSSAT PCMMNEVIVI
1001: DDSPKTDKQP SLSSPTSTLP FDASSLNPLS QRSFSCLSSQ DHIEDPPSGM RPLLPNLYTG VDASLIKRYS TAEGHFMFQS PGTAYMRPSI CYSQTLH
001: MFLSSTDQRS PSNNNPSSSS SFLHLTNSCD ELGQSHLSTF SIRDYAFSYR TKNIKKSWPF SSTSLQLCLN HGLTDPLPPI QPPEVKKPNI THVEAVSHKR
101: KSEKLGSYQI LVETTKQGFE NGLLASGSKS KIQVAMVNKN PRKKCGLIVK PGACVDSGGK EDHSSLFSAS DSMALRTCPI CKTFSSASNT TLNAHIDQCL
201: SVDSGQQPIR KPNRPKTKPR LKVKTMTDIY ASAKEGTLED LDKRNGTKWA MISSYSNRVV SDDKPEVSNK VKKRSVSRAR IDEDAAGIGP VYIDAKGQKL
301: RILSKFNEKA SDPSRREHEE VCEKKSSSEG KGGKSFRKKL WGEKHYKHRK LVPQNRKLTV RKSNASEIPE YRRGYSKEGK DFERSETSGP GQGRIFNQRM
401: LTKRSLSRHG KKNGTDICES ENWNSLSEDP LVLRSPSHVS TDLSETVSSP LNSIGSWRVC GESQVSGKSW ALSRNRSIES DLFVANPLRC LTPVARGVMK
501: FKKARMDFSE NEDEDIGKWE SEMTQERELS DYDGWDDDDG ETDKVALSSN PSFSGEDNDY ESYEETGDNK GGDDMLDKTK DADVEFESMV YEKTGCETAE
601: QESSFMEVDP IPIPGPPGSF LPSPWDMMGT DAVEHHGNSS VITSQVHSSQ DQFDLTDRNS SESPVSAISN FAAPETQTLS LHNIITTDKR PSRFRDNDQS
701: CCCQRKEKAL EDTTFCQPPP PQMIQQDLDF LSKSVPAVPS TPNPVLRLMG KDLMVINQRE EPSHNESSPK PTSQFLDLSK TQQASPSVNL LHPPYSGNGY
801: FDTNTSFYNI P
101: KSEKLGSYQI LVETTKQGFE NGLLASGSKS KIQVAMVNKN PRKKCGLIVK PGACVDSGGK EDHSSLFSAS DSMALRTCPI CKTFSSASNT TLNAHIDQCL
201: SVDSGQQPIR KPNRPKTKPR LKVKTMTDIY ASAKEGTLED LDKRNGTKWA MISSYSNRVV SDDKPEVSNK VKKRSVSRAR IDEDAAGIGP VYIDAKGQKL
301: RILSKFNEKA SDPSRREHEE VCEKKSSSEG KGGKSFRKKL WGEKHYKHRK LVPQNRKLTV RKSNASEIPE YRRGYSKEGK DFERSETSGP GQGRIFNQRM
401: LTKRSLSRHG KKNGTDICES ENWNSLSEDP LVLRSPSHVS TDLSETVSSP LNSIGSWRVC GESQVSGKSW ALSRNRSIES DLFVANPLRC LTPVARGVMK
501: FKKARMDFSE NEDEDIGKWE SEMTQERELS DYDGWDDDDG ETDKVALSSN PSFSGEDNDY ESYEETGDNK GGDDMLDKTK DADVEFESMV YEKTGCETAE
601: QESSFMEVDP IPIPGPPGSF LPSPWDMMGT DAVEHHGNSS VITSQVHSSQ DQFDLTDRNS SESPVSAISN FAAPETQTLS LHNIITTDKR PSRFRDNDQS
701: CCCQRKEKAL EDTTFCQPPP PQMIQQDLDF LSKSVPAVPS TPNPVLRLMG KDLMVINQRE EPSHNESSPK PTSQFLDLSK TQQASPSVNL LHPPYSGNGY
801: FDTNTSFYNI P
Arabidopsis Description
HAP8Hapless 8 [Source:UniProtKB/TrEMBL;Acc:Q9FH14]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.