Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g107290.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G56250.1 | Solyc01g107290.2.1 | AT1G49850.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400056953 | Potato | nucleus | 91.49 | 87.89 |
| CDY06514 | Canola | nucleus, plastid | 15.22 | 29.61 |
| CDY36783 | Canola | cytosol | 2.61 | 29.41 |
| Bra035611.1-P | Field mustard | nucleus, plastid | 15.75 | 28.94 |
| CDY20740 | Canola | plastid | 15.67 | 28.42 |
| AT5G56250.1 | Thale cress | nucleus | 17.09 | 28.24 |
| CDY11950 | Canola | nucleus | 15.52 | 27.37 |
| VIT_19s0015g01810.t01 | Wine grape | nucleus | 28.36 | 27.32 |
| CDY36786 | Canola | nucleus, plastid | 15.3 | 27.22 |
| Bra028941.1-P | Field mustard | nucleus, plastid | 15.3 | 27.22 |
| CDY06515 | Canola | nucleus, plastid | 18.36 | 27.21 |
| CDY17406 | Canola | nucleus, plastid | 18.81 | 27.01 |
| CDY11951 | Canola | nucleus, plastid | 17.91 | 26.91 |
| AT5G56240.3 | Thale cress | nucleus | 19.7 | 26.75 |
| CDY62101 | Canola | nucleus | 13.51 | 26.46 |
| CDY32803 | Canola | nucleus | 18.58 | 26.21 |
| CDY36785 | Canola | nucleus | 11.19 | 25.86 |
| Bra002832.1-P | Field mustard | nucleus | 18.51 | 25.59 |
| Bra002831.1-P | Field mustard | nucleus | 11.42 | 25.5 |
| CDY32802 | Canola | nucleus | 11.42 | 25.5 |
| Bra035610.1-P | Field mustard | nucleus, plastid | 18.21 | 25.47 |
| CDY65749 | Canola | nucleus | 16.42 | 24.94 |
| Bra028942.1-P | Field mustard | nucleus | 17.84 | 24.92 |
| GSMUA_Achr5P04160_001 | Banana | nucleus | 16.94 | 24.41 |
| GSMUA_Achr10P... | Banana | nucleus | 18.21 | 22.24 |
| GSMUA_Achr9P12690_001 | Banana | nucleus | 20.37 | 21.6 |
| Os04t0471400-01 | Rice | nucleus | 19.78 | 21.39 |
| OQU81762 | Sorghum | nucleus | 19.4 | 21.04 |
| GSMUA_Achr4P01620_001 | Banana | nucleus | 19.78 | 20.92 |
| Zm00001d025668_P005 | Maize | nucleus | 19.25 | 20.82 |
| Zm00001d003333_P005 | Maize | nucleus | 18.96 | 20.5 |
| GSMUA_Achr10P... | Banana | nucleus | 16.04 | 19.04 |
| TraesCS2D01G332100.1 | Wheat | nucleus | 17.31 | 18.79 |
| TraesCS2A01G330900.1 | Wheat | nucleus | 17.09 | 18.53 |
| TraesCS2B01G351400.1 | Wheat | nucleus | 16.87 | 18.33 |
| GSMUA_Achr3P10940_001 | Banana | nucleus | 17.61 | 18.04 |
| GSMUA_Achr7P20270_001 | Banana | nucleus | 17.31 | 17.63 |
Protein Annotations
| EnsemblPlants:Solyc07g066200.2.1 | EnsemblPlantsGene:Solyc07g066200.2 | PANTHER:PTHR35767 | PANTHER:PTHR35767:SF1 | SEG:seg | UniParc:UPI000276B284 |
| UniProt:K4CHU6 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr7:-:67670779..67676199
Molecular Weight (calculated)
146441.0 Da
IEP (calculated)
8.407
GRAVY (calculated)
-0.731
Length
1340 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLSIENIPPD PCHISLLKSS SSDERPSSDN KIVDLSNSDL DDNNNNKFSI RDYVFRTRRK DIKTNWPFSQ KNLQLCLRHG ATTDLLPPFQ SDKECAVDNR
0101: STDKDNIVTS EEKHVELDDD PVPTSSSSGR ICMPKLAVDC RNINSSGSDR EKVFRSTLTS RSCSEIDSVP TAETRKQRCS GAEAVNLLEP LVKKPPMSNK
0201: SGSTVQQQSA KKCRLMVKFG NGTDRNVDEA DTTTNSFMVS EAMASKVCPV CKTFTSSSNT TLNAHIDQCL SGESSTAKWT ANPKVIKHRI KSRKTRLMVD
0301: IYATAKSCTL EDLDRRNGTN WASNPTLSIR EITEVPGVEK LEKPPPVNLE CTANEGAVYI DANGTKLRIL SKFNDEQLPS SKPVIDPLQK KMVDGDKRSK
0401: FILTKKRKKH HNLLKSASHT KKFCLSKPDH CPKIKSGQES TFCPRENVDK MDCLNKDLRS ADQMLSNGLA TIKQWACSKR TGLTRKISDK DNHQLSGADM
0501: STGVQSDNDV LPQTYPFKKR SGLVKSPRSS VCLPESSQRM GNMLLDQPQE ERSEEPPSLH KKVVDFSSSQ SSLPSNKKRS LVLQRCKGKH LKVDGHSVNN
0601: HPKMTTGHAL SVKNVRVGRN TDNYSEVNCE QSTAHPSFSS KARKLSSLRK NLSSVSEGPA RGVKYNLKWK TASFKKSSRS SSSESEEAEV FQTEGEKLCL
0701: RGNLSETKIQ GSRNRDWVNV KRSEVLSIRK NREGIMASNL EGTLGLKSSQ SSALTHSDNE TGSILAGASD ALGSVKANHQ SKSDKTMDPT VSELAGRGDF
0801: TSFSKPMDAG SDEMSGPART HCESQLFSEE YKGSFLGTKA ATCSQDPILG VEGMIDGDVH DVAELGSNAD GQGNYFLEVD PIPIPGPPGS FLPSPGRMSS
0901: EDLHGSSSLS SSRIQSSADH PEFIDQDSSG SPTSAASTVS NSTMARTGSR YSGNLYDSGR DSSEIFTNDK PCCCVRKEGG TSQGFAVNRE ESQLLQRRAI
1001: ALSPFPASEN QLSRDSLTRC NNIILKSNSF SLSDSSSGPE TNDPTKSSAT AHTQFGISAD SEFKLPTRES ESFSPSASNP VLRLMGKDLM VINKDEDSPL
1101: KRSSHSNSMI DQANTRSRNE DLNSFHQVDA HNRLVPHFPQ SGDPVQHFDV RLLNGFKSQD SYSRPQVQPS PTSPASFLCK SSGSGLMGAP FGRQDYLGRG
1201: NLHTVRNGPN ETCDMKKFVA TPISHWQNAT SVGPNAVREI IVIDDSPENE ANSPYTMNSG KMQISSGYTS RFVDLCENRP RGETGAAQNA NLLTQVNELP
1301: AKTWNVNPDG CSLVHPSSFS ASSSPAGPFR SSLYYSPGFS
0101: STDKDNIVTS EEKHVELDDD PVPTSSSSGR ICMPKLAVDC RNINSSGSDR EKVFRSTLTS RSCSEIDSVP TAETRKQRCS GAEAVNLLEP LVKKPPMSNK
0201: SGSTVQQQSA KKCRLMVKFG NGTDRNVDEA DTTTNSFMVS EAMASKVCPV CKTFTSSSNT TLNAHIDQCL SGESSTAKWT ANPKVIKHRI KSRKTRLMVD
0301: IYATAKSCTL EDLDRRNGTN WASNPTLSIR EITEVPGVEK LEKPPPVNLE CTANEGAVYI DANGTKLRIL SKFNDEQLPS SKPVIDPLQK KMVDGDKRSK
0401: FILTKKRKKH HNLLKSASHT KKFCLSKPDH CPKIKSGQES TFCPRENVDK MDCLNKDLRS ADQMLSNGLA TIKQWACSKR TGLTRKISDK DNHQLSGADM
0501: STGVQSDNDV LPQTYPFKKR SGLVKSPRSS VCLPESSQRM GNMLLDQPQE ERSEEPPSLH KKVVDFSSSQ SSLPSNKKRS LVLQRCKGKH LKVDGHSVNN
0601: HPKMTTGHAL SVKNVRVGRN TDNYSEVNCE QSTAHPSFSS KARKLSSLRK NLSSVSEGPA RGVKYNLKWK TASFKKSSRS SSSESEEAEV FQTEGEKLCL
0701: RGNLSETKIQ GSRNRDWVNV KRSEVLSIRK NREGIMASNL EGTLGLKSSQ SSALTHSDNE TGSILAGASD ALGSVKANHQ SKSDKTMDPT VSELAGRGDF
0801: TSFSKPMDAG SDEMSGPART HCESQLFSEE YKGSFLGTKA ATCSQDPILG VEGMIDGDVH DVAELGSNAD GQGNYFLEVD PIPIPGPPGS FLPSPGRMSS
0901: EDLHGSSSLS SSRIQSSADH PEFIDQDSSG SPTSAASTVS NSTMARTGSR YSGNLYDSGR DSSEIFTNDK PCCCVRKEGG TSQGFAVNRE ESQLLQRRAI
1001: ALSPFPASEN QLSRDSLTRC NNIILKSNSF SLSDSSSGPE TNDPTKSSAT AHTQFGISAD SEFKLPTRES ESFSPSASNP VLRLMGKDLM VINKDEDSPL
1101: KRSSHSNSMI DQANTRSRNE DLNSFHQVDA HNRLVPHFPQ SGDPVQHFDV RLLNGFKSQD SYSRPQVQPS PTSPASFLCK SSGSGLMGAP FGRQDYLGRG
1201: NLHTVRNGPN ETCDMKKFVA TPISHWQNAT SVGPNAVREI IVIDDSPENE ANSPYTMNSG KMQISSGYTS RFVDLCENRP RGETGAAQNA NLLTQVNELP
1301: AKTWNVNPDG CSLVHPSSFS ASSSPAGPFR SSLYYSPGFS
001: MFLSTENPPN DPLSSSSSPF LQHLTSSSHE LGQSHLSNFS IRDYAYSNRK NNIKNNWPFS SKSLQLFSTH GVTNPLPPFQ KFSTVSSKFE TTASPSSGKQ
101: IVSSYVHQGR DLDLAKLGLN QTVAETSSKG VCSQSRIIEN GLFPSTSVSK SEVEILVATT SNKKDNHSRK CGRGMVKSKE DSCAGLVTTS ESIMASKTCP
201: ICKTFSSASN TTLNAHIDQC LSVDSALLPP VVFSKPNKPR SKPPRVKVKT MVDIYASAKQ GTLEDLDRRN GTKWVSILSY SNRVVADKSE VSKKRKVSPV
301: GVGPVYIDAK GQKLRILSGF SEKKSSTTPL REQHEDGSSD KKCLGQGSKG TNKSLRKIRR GKKPHKFVKL TNHKADGPEQ IRGVQRGFSG EGSHMGHHRR
401: IYNQRMLAKR GLVSKKLNEK GHELSEDDED TWSGGDPTVL RGTDLSATDS YPLKKQKLGS EVAGRKKTLF RSQSAQSRSF RVPQSEKEDE SLEGVNINRL
501: KKSVASFQED KYPPGKKFCS DASPRGTSMR KFSPPFVPNA WRRLSMPVEL KKARLDFSEE KDDEETGKWE SEMTHERELR DDDYVSGDDG ENNEVLLRSN
601: PSSSGYDDYN DDDEESSEEE GDNNKRAHVL DQTDYTGAEF YQSESDSPTS IEILPSERAM YYSEAGNMIY GQTSCKEDER FDSEVGQGSL FVEVDTIPIP
701: GPPGSFLPSP RDMGFDENLG NSSVITSQVQ SSMDQLDRNS SESPVSAVSN FAAGRLNFPA ELSSFRENFS PDIAMSYSTT PMSFCVPSHH GTITEAEPIT
801: IDKTISPSRF RNNDQESCCC QRKERISEGI TLNHQGSHLL QRRAASSSNT MNLTNSPTRL DPNHPFEQSP YKTQQALDLQ MSKFSSRKSL NAVVPPSPSN
901: PVLRLMGKDL MVMNQGEADE EASRSSLTPN PQFVDPPCGG TGLYFNTGLY LRNSFDSTHQ PQVQAQQQSQ AAAFRNNFDH VRYFSPS
101: IVSSYVHQGR DLDLAKLGLN QTVAETSSKG VCSQSRIIEN GLFPSTSVSK SEVEILVATT SNKKDNHSRK CGRGMVKSKE DSCAGLVTTS ESIMASKTCP
201: ICKTFSSASN TTLNAHIDQC LSVDSALLPP VVFSKPNKPR SKPPRVKVKT MVDIYASAKQ GTLEDLDRRN GTKWVSILSY SNRVVADKSE VSKKRKVSPV
301: GVGPVYIDAK GQKLRILSGF SEKKSSTTPL REQHEDGSSD KKCLGQGSKG TNKSLRKIRR GKKPHKFVKL TNHKADGPEQ IRGVQRGFSG EGSHMGHHRR
401: IYNQRMLAKR GLVSKKLNEK GHELSEDDED TWSGGDPTVL RGTDLSATDS YPLKKQKLGS EVAGRKKTLF RSQSAQSRSF RVPQSEKEDE SLEGVNINRL
501: KKSVASFQED KYPPGKKFCS DASPRGTSMR KFSPPFVPNA WRRLSMPVEL KKARLDFSEE KDDEETGKWE SEMTHERELR DDDYVSGDDG ENNEVLLRSN
601: PSSSGYDDYN DDDEESSEEE GDNNKRAHVL DQTDYTGAEF YQSESDSPTS IEILPSERAM YYSEAGNMIY GQTSCKEDER FDSEVGQGSL FVEVDTIPIP
701: GPPGSFLPSP RDMGFDENLG NSSVITSQVQ SSMDQLDRNS SESPVSAVSN FAAGRLNFPA ELSSFRENFS PDIAMSYSTT PMSFCVPSHH GTITEAEPIT
801: IDKTISPSRF RNNDQESCCC QRKERISEGI TLNHQGSHLL QRRAASSSNT MNLTNSPTRL DPNHPFEQSP YKTQQALDLQ MSKFSSRKSL NAVVPPSPSN
901: PVLRLMGKDL MVMNQGEADE EASRSSLTPN PQFVDPPCGG TGLYFNTGLY LRNSFDSTHQ PQVQAQQQSQ AAAFRNNFDH VRYFSPS
Arabidopsis Description
BEST Arabidopsis thaliana protein match is: hapless 8 (TAIR:AT5G56250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: /.../BLink). [Source:TAIR;Acc:AT5G56240]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.