Factsheet for Bra028941.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra014221.1-P
Bra039652.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56250.1	Bra014221.1-P	AT1G49850.1	21798944
AT5G56250.1	Bra039652.1-P	AT1G49850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36786	Canola	nucleus, plastid	100.0	100.0
Bra035611.1-P	Field mustard	nucleus, plastid	56.31	58.16
AT5G56250.1	Thale cress	nucleus	61.75	57.34
Bra002831.1-P	Field mustard	nucleus	37.85	47.5
Bra002832.1-P	Field mustard	nucleus	39.71	30.86
Bra035610.1-P	Field mustard	nucleus, plastid	37.32	29.33
Bra028942.1-P	Field mustard	nucleus	37.18	29.2
GSMUA_Achr5P04160_001	Banana	nucleus	20.19	16.34
Solyc07g066200.2.1	Tomato	nucleus	27.22	15.3
VIT_19s0015g01810.t01	Wine grape	nucleus	28.02	15.17
Zm00001d003333_P005	Maize	nucleus	24.7	15.01
Zm00001d025668_P005	Maize	nucleus	24.44	14.85
OQU81762	Sorghum	nucleus	24.3	14.81
Os04t0471400-01	Rice	nucleus	23.9	14.53
GSMUA_Achr10P...	Banana	nucleus	20.98	14.4
PGSC0003DMT400056953	Potato	nucleus	26.56	14.34
TraesCS2A01G330900.1	Wheat	nucleus	23.51	14.32
TraesCS2B01G351400.1	Wheat	nucleus	23.37	14.27
TraesCS2D01G332100.1	Wheat	nucleus	23.11	14.09
GSMUA_Achr9P12690_001	Banana	nucleus	23.37	13.92
GSMUA_Achr10P...	Banana	nucleus	20.32	13.55
GSMUA_Achr4P01620_001	Banana	nucleus	21.38	12.71
GSMUA_Achr7P20270_001	Banana	nucleus	21.91	12.54
GSMUA_Achr3P10940_001	Banana	nucleus	20.98	12.08

Protein Annotations

EnsemblPlants:Bra028941.1	EnsemblPlants:Bra028941.1-P	EnsemblPlantsGene:Bra028941	PANTHER:PTHR35767	PANTHER:PTHR35767:SF1	SEG:seg
UniParc:UPI000253FD9E	UniProt:M4EJH5	MapMan:35.2	:	:	:

Description

AT5G56250 (E=7e-248) HAP8 | HAP8 (HAPLESS 8)

Coordinates

chrA03:+:5521115..5523862

Molecular Weight (calculated)

83014.5 Da

IEP (calculated)

6.276

GRAVY (calculated)

-0.855

Length

753 amino acids

Sequence
(BLAST)

001: MKNSREVNSN SGRIKCSSYP SLSTDEGSPN NPSSSSHFLH LTKPSDELGQ SHLSTFSIRG YAFSNRTKNI QKSWPFSSTS LQLCLKHGLS DPLPPIQPLG
101: PMISHPPEAS SSNKPTLTHV EAISSKRKLG RLASSDHASA EITKQGFENG SKSKTQVTTV NKTPRKKCGL VVKPGACVDG SSKEDQALRT CPICKTFSSA
201: SNTTLNAHID QCLSVDLGEQ PVSKPNKPRN HKPRLKVKTM VDIYASAKGC TLEDLDRRNG TKWAVISSYS NRVIVCDNNK SEVSNKEKKL DEDGDAGIGP
301: VYIDAKGQKL RIISEVKEKA AEPSREHEKK SFSEGKRSYK SCKKRLEGNA SEIHESRRGC SEECRGMERL ETPGTSQRRR MLRKHSLSRN ESKKGRSMCD
401: QPSENMHSLS EDPLVLKGPS LVSTDLSEAV NSQSSWRSCG DSQISGKSTN FAAPKPVDKG VMKLKKAWRF DVSENEDEDS GRWESEMTQE LELADYDDWD
501: EAEETDKGLP STRGEDNDYE SLEETGNNKG DCDMLDTIDA EFESMVLEKN GFETEEGGSS FMEVDPIPIP GPPGSFLESP WDMGTDATAT ENHGNFFQVQ
601: TSFDQLDLTD RNLSESPVSA VSNFAAPETQ TFSLHNIITT DNDQSCCCQR KENALEGTTF RQPPPHMIHQ DLLSKSVPPV PSNSGPVLRL MGKDLMVMNQ
701: REETSHGDPS TKPTSQFQDL SKTQQASPRA HLHPPYGGNG LYLDATTSFY NIP

Best Arabidopsis Sequence Match ( AT5G56250.2 )
(BLAST)

001: MFLSSTDQRS PSNNNPSSSS SFLHLTNSCD ELGQSHLSTF SIRDYAFSYR TKNIKKSWPF SSTSLQLCLN HGLTDPLPPI QPPEVKKPNI THVEAVSHKR
101: KSEKLGSYQI LVETTKQGFE NGLLASGSKS KIQVAMVNKN PRKKCGLIVK PGACVDSGGK EDHSSLFSAS DSMALRTCPI CKTFSSASNT TLNAHIDQCL
201: SVDSGQQPIR KPNRPKTKPR LKVKTMTDIY ASAKEGTLED LDKRNGTKWA MISSYSNRVV SDDKPEVSNK VKKRSVSRAR IDEDAAGIGP VYIDAKGQKL
301: RILSKFNEKA SDPSRREHEE VCEKKSSSEG KGGKSFRKKL WGEKHYKHRK LVPQNRKLTV RKSNASEIPE YRRGYSKEGK DFERSETSGP GQGRIFNQRM
401: LTKRSLSRHG KKNGTDICES ENWNSLSEDP LVLRSPSHVS TDLSETVSSP LNSIGSWRVC GESQVSGKSW ALSRNRSIES DLFVANPLRC LTPVARGVMK
501: FKKARMDFSE NEDEDIGKWE SEMTQERELS DYDGWDDDDG ETDKVALSSN PSFSGEDNDY ESYEETGDNK GGDDMLDKTK DADVEFESMV YEKTGCETAE
601: QESSFMEVDP IPIPGPPGSF LPSPWDMMGT DAVEHHGNSS VITSQVHSSQ DQFDLTDRNS SESPVSAISN FAAPETQTLS LHNIITTDKR PSRFRDNDQS
701: CCCQRKEKAL EDTTFCQPPP PQMIQQDLDF LSKSVPAVPS TPNPVLRLMG KDLMVINQRE EPSHNESSPK PTSQFLDLSK TQQASPSVNL LHPPYSGNGY
801: FDTNTSFYNI P

Arabidopsis Description

HAP8Hapless 8 [Source:UniProtKB/TrEMBL;Acc:Q9FH14]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.