Factsheet for GSMUA_Achr10P31460_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P32570_001
GSMUA_Achr6P24690_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56250.1	GSMUA_Achr4P32570_001	AT1G49850.1	21798944
AT5G56250.1	GSMUA_Achr6P24690_001	AT1G49850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P20270_001	Banana	nucleus	37.11	31.84
GSMUA_Achr5P04160_001	Banana	nucleus	22.23	26.99
GSMUA_Achr10P...	Banana	nucleus	26.22	26.98
GSMUA_Achr4P01620_001	Banana	nucleus	27.55	24.55
GSMUA_Achr9P12690_001	Banana	nucleus	26.66	23.81
Os04t0471400-01	Rice	nucleus	25.86	23.57
GSMUA_Achr3P10940_001	Banana	nucleus	26.57	22.94
OQU81762	Sorghum	nucleus	24.89	22.73
CDY36785	Canola	nucleus	11.6	22.59
Zm00001d003333_P005	Maize	nucleus	24.71	22.52
Zm00001d025668_P005	Maize	nucleus	24.36	22.2
AT5G56250.1	Thale cress	nucleus	15.94	22.19
CDY06514	Canola	nucleus, plastid	13.46	22.06
TraesCS2D01G332100.1	Wheat	nucleus	23.83	21.78
TraesCS2A01G330900.1	Wheat	nucleus	23.83	21.76
Bra035611.1-P	Field mustard	nucleus, plastid	13.99	21.67
TraesCS2B01G351400.1	Wheat	nucleus	23.3	21.33
CDY20740	Canola	plastid	13.73	20.97
CDY36786	Canola	nucleus, plastid	13.55	20.32
Bra028941.1-P	Field mustard	nucleus, plastid	13.55	20.32
CDY62101	Canola	nucleus	12.22	20.18
CDY11950	Canola	nucleus	13.55	20.13
CDY11951	Canola	nucleus, plastid	15.77	19.96
CDY06515	Canola	nucleus, plastid	15.85	19.8
CDY32802	Canola	nucleus	10.19	19.17
Bra002831.1-P	Field mustard	nucleus	10.19	19.17
Bra035610.1-P	Field mustard	nucleus, plastid	15.94	18.79
AT5G56240.3	Thale cress	nucleus	16.39	18.74
CDY65749	Canola	nucleus	14.53	18.59
CDY36783	Canola	cytosol	1.95	18.49
Bra028942.1-P	Field mustard	nucleus	15.68	18.46
CDY17406	Canola	nucleus, plastid	14.61	17.68
CDY32803	Canola	nucleus	14.7	17.47
Bra002832.1-P	Field mustard	nucleus	14.7	17.13
VIT_19s0015g01810.t01	Wine grape	nucleus	21.08	17.11
Solyc07g066200.2.1	Tomato	nucleus	19.04	16.04
PGSC0003DMT400056953	Potato	nucleus	19.13	15.48

Protein Annotations

EnsemblPlants:GSMUA_Achr10P31460_001	EnsemblPlants:GSMUA_Achr10T31460_001	EnsemblPlantsGene:GSMUA_Achr10G31460_001	PANTHER:PTHR35767	PANTHER:PTHR35767:SF1	SEG:seg
UniParc:UPI000295D3ED	UniProt:M0RN20	MapMan:35.2	:	:	:

Description

Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G31460_001]

Coordinates

chr10:-:33552486..33557312

Molecular Weight (calculated)

123924.0 Da

IEP (calculated)

7.404

GRAVY (calculated)

-0.661

Length

1129 amino acids

Sequence
(BLAST)

0001: MLSTENPAGP SCSSKLPAVR THVRASPDSL PSQERDPVVL QERRIPNFSI RDYVFTSRSK GIEASWPFAA QFLQPYSKHG VNDLLPPFEN PDTVRTQSLC
0101: KVAQLVQPAA CSKPERIATH FDVLKPADAG PSDGALASVL QDPTINPSPE DGNGSSSKAQ FQPEVIDLGN TPEKLCEPLE KKNRLIPKLD TILETSKAED
0201: LAEMHSIALN VCPVCRIFSC TLITTLNAHM DQCLSMGSNF KAATTSNVPE HRVKPRKRRL MMDIYATSCH CTLEDLDKRN GTSWASELSL IAAPVNSLCA
0301: AHTKRPEVSP TDSTNNGNGA VSADPNGVKL RILSKFKGQK LSKESFKLRK HAKEPKENKD KHFASKHLEN KKLKAQKQQL ISLNMLQSQI QAAAQVDCET
0401: ENHQKSDKSP SHVSDSGDHE KRADILQKMN KKENCSTLED MESITSELQS MNGNLTGSPG TERVNFRHNP VHSMDESKRD SPELPSSSRW PSEGTNLANG
0501: IILKLSRSSG SLICSSVMKS KETDMATWED SDSNSNSKMV LSRSCCSLLK DETNTTSKKN TVVRSRVCLQ PRKLGAIEKP FISKKFQKHR TDMKKGENSP
0601: SNSAGVCSPT VNIHLLRTRE TGTMGSHQSY TPSSITMFGG EDMNEVSPSR RNDTEHLNIV EEQKSNTSNN LSSGAECSDT EIETSDSGDY ATRISMIKAV
0701: PENSEKTELP FSTKLGSPSC VEHAQTTSEI EAHAEQLKQA FDEQQRFSGE GSSIEIGNQE IQAKKDCCTI QLKECQAETL SVQESSGCLT GHGDEGLEMP
0801: EKNSSIDSFR MKAIFFKNLS SEGEPSGSPV STDSKSQVSE VEPLSIAVNT RESIHLATPS AESIEATQDR NLKNWKQENS NIRPPHQSVS VKSPLDFAVK
0901: ISSPRPSPQS QIHSVSSPIL RLMGKNLMVV NHEEIVQPQT TALDCTQYVN HCASSNNHLK REISPYQHNQ LSSGSPAIGS GLPMGDHQMP LDLPSTSVGG
1001: FAWASLQNGR RDQQTQQRKS STKLTSSHHT LDKVIVIDGS PKHEADLKGC LSNSATTLPN RPFSCYPLQH HIRDCPRILF PNAYSSVSAS FMNQGITSEG
1101: HNLFLSSPTV FQSPTSQKGP LMYYSRILH

Best Arabidopsis Sequence Match ( AT5G56250.2 )
(BLAST)

001: MFLSSTDQRS PSNNNPSSSS SFLHLTNSCD ELGQSHLSTF SIRDYAFSYR TKNIKKSWPF SSTSLQLCLN HGLTDPLPPI QPPEVKKPNI THVEAVSHKR
101: KSEKLGSYQI LVETTKQGFE NGLLASGSKS KIQVAMVNKN PRKKCGLIVK PGACVDSGGK EDHSSLFSAS DSMALRTCPI CKTFSSASNT TLNAHIDQCL
201: SVDSGQQPIR KPNRPKTKPR LKVKTMTDIY ASAKEGTLED LDKRNGTKWA MISSYSNRVV SDDKPEVSNK VKKRSVSRAR IDEDAAGIGP VYIDAKGQKL
301: RILSKFNEKA SDPSRREHEE VCEKKSSSEG KGGKSFRKKL WGEKHYKHRK LVPQNRKLTV RKSNASEIPE YRRGYSKEGK DFERSETSGP GQGRIFNQRM
401: LTKRSLSRHG KKNGTDICES ENWNSLSEDP LVLRSPSHVS TDLSETVSSP LNSIGSWRVC GESQVSGKSW ALSRNRSIES DLFVANPLRC LTPVARGVMK
501: FKKARMDFSE NEDEDIGKWE SEMTQERELS DYDGWDDDDG ETDKVALSSN PSFSGEDNDY ESYEETGDNK GGDDMLDKTK DADVEFESMV YEKTGCETAE
601: QESSFMEVDP IPIPGPPGSF LPSPWDMMGT DAVEHHGNSS VITSQVHSSQ DQFDLTDRNS SESPVSAISN FAAPETQTLS LHNIITTDKR PSRFRDNDQS
701: CCCQRKEKAL EDTTFCQPPP PQMIQQDLDF LSKSVPAVPS TPNPVLRLMG KDLMVINQRE EPSHNESSPK PTSQFLDLSK TQQASPSVNL LHPPYSGNGY
801: FDTNTSFYNI P

Arabidopsis Description

HAP8Hapless 8 [Source:UniProtKB/TrEMBL;Acc:Q9FH14]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.