Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G56250.1 | CDY16531 | AT1G49850.1 | 21798944 |
| AT5G56250.1 | CDY20854 | AT1G49850.1 | 21798944 |
| AT5G56250.1 | CDY32837 | AT1G49850.1 | 21798944 |
| AT5G56250.1 | CDY61552 | AT1G49850.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002831.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY62101 | Canola | nucleus | 73.17 | 64.18 |
| CDY20740 | Canola | plastid | 53.0 | 43.03 |
| AT5G56250.1 | Thale cress | nucleus | 55.67 | 41.18 |
| CDY06514 | Canola | nucleus, plastid | 43.5 | 37.88 |
| CDY36786 | Canola | nucleus, plastid | 47.5 | 37.85 |
| CDY11950 | Canola | nucleus | 47.17 | 37.24 |
| CDY11951 | Canola | nucleus, plastid | 34.67 | 23.32 |
| CDY36785 | Canola | nucleus | 22.17 | 22.93 |
| CDY36783 | Canola | cytosol | 4.5 | 22.69 |
| CDY06515 | Canola | nucleus, plastid | 33.83 | 22.46 |
| CDY65749 | Canola | nucleus | 32.67 | 22.22 |
| CDY32803 | Canola | nucleus | 35.17 | 22.21 |
| CDY17406 | Canola | nucleus, plastid | 33.0 | 21.22 |
| GSMUA_Achr5P04160_001 | Banana | nucleus | 17.83 | 11.51 |
| Solyc07g066200.2.1 | Tomato | nucleus | 25.5 | 11.42 |
| VIT_19s0015g01810.t01 | Wine grape | nucleus | 25.67 | 11.07 |
| PGSC0003DMT400056953 | Potato | nucleus | 25.33 | 10.9 |
| Zm00001d025668_P005 | Maize | nucleus | 22.33 | 10.82 |
| GSMUA_Achr10P... | Banana | nucleus | 19.67 | 10.76 |
| OQU81762 | Sorghum | nucleus | 21.67 | 10.52 |
| Zm00001d003333_P005 | Maize | nucleus | 21.67 | 10.49 |
| GSMUA_Achr10P... | Banana | nucleus | 19.17 | 10.19 |
| Os04t0471400-01 | Rice | nucleus | 20.17 | 9.77 |
| TraesCS2A01G330900.1 | Wheat | nucleus | 20.0 | 9.71 |
| GSMUA_Achr9P12690_001 | Banana | nucleus | 20.33 | 9.65 |
| TraesCS2B01G351400.1 | Wheat | nucleus | 19.67 | 9.57 |
| TraesCS2D01G332100.1 | Wheat | nucleus | 19.5 | 9.47 |
| GSMUA_Achr4P01620_001 | Banana | nucleus | 19.67 | 9.31 |
| GSMUA_Achr3P10940_001 | Banana | nucleus | 19.67 | 9.02 |
| GSMUA_Achr7P20270_001 | Banana | nucleus | 18.67 | 8.51 |
Protein Annotations
| EnsemblPlants:CDY32802 | EnsemblPlantsGene:GSBRNA2T00052876001 | ncoils:Coil | PANTHER:PTHR35767 | PANTHER:PTHR35767:SF1 | ProteinID:CDY32802 |
| ProteinID:CDY32802.1 | SEG:seg | UniParc:UPI000254485F | UniProt:A0A078H5S5 | MapMan:35.2 | : |
Description
BnaA10g10470DBnaA10g10470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H5S5]
Coordinates
chrLK032299:+:388983..390908
Molecular Weight (calculated)
66464.7 Da
IEP (calculated)
6.985
GRAVY (calculated)
-0.820
Length
600 amino acids
Sequence
(BLAST)
(BLAST)
001: MQVNTGPRTL KKAGLFPQHG LTDPLPPMQP LNFVVSLPPE AISCKRKFEK LCSNQALAET KQGFENGSLA SGSKSKIQVA NVNKNPIKKC GFVVKAGACG
101: DGESKADQGC VTTLNAHIDK CLSVDSGQQP ISKPRRKVKR MVDIYATAKR CTLEDLDQRN GTKWDMSSSY SSNKVVSDNN KPQVCNKRKK RSVLHANIDE
201: DAATIGPVYI DAKGQKLRII SEFNEKASEE DVSEKESSKE GKGNYRGFRE RLLGKKYHKH CKCNASEILE CRRGYSEECV IKKHLWRNVC DQPSENGHSL
301: SAADPPVSRG PSHANFDLTE TVSSLLNSHN SWRSCGESQV SGKITKRERC SMPVDKVKLK KARSENEEED EDSGRWESEM TQERVMADYN DNEERYKVFL
401: SSKTSTTGGE EIGNNNIRDD NMLDKTSTDA DAEFESMVYE ETGCDDTEER GGNTFMEVDP IPIPGPPGSF LQSPWDMETD ASEHRGNFSV KSLSESTFGQ
501: AAPHMIQQDL GLLSKSFHAA PSSSTSVLRL MGKDLMVINQ REDTSRGDSC LKSTSQFQDL AKTQHVSPPA HLLPRSYGGN GLYTPAQAFT TFRDNSNQEL
101: DGESKADQGC VTTLNAHIDK CLSVDSGQQP ISKPRRKVKR MVDIYATAKR CTLEDLDQRN GTKWDMSSSY SSNKVVSDNN KPQVCNKRKK RSVLHANIDE
201: DAATIGPVYI DAKGQKLRII SEFNEKASEE DVSEKESSKE GKGNYRGFRE RLLGKKYHKH CKCNASEILE CRRGYSEECV IKKHLWRNVC DQPSENGHSL
301: SAADPPVSRG PSHANFDLTE TVSSLLNSHN SWRSCGESQV SGKITKRERC SMPVDKVKLK KARSENEEED EDSGRWESEM TQERVMADYN DNEERYKVFL
401: SSKTSTTGGE EIGNNNIRDD NMLDKTSTDA DAEFESMVYE ETGCDDTEER GGNTFMEVDP IPIPGPPGSF LQSPWDMETD ASEHRGNFSV KSLSESTFGQ
501: AAPHMIQQDL GLLSKSFHAA PSSSTSVLRL MGKDLMVINQ REDTSRGDSC LKSTSQFQDL AKTQHVSPPA HLLPRSYGGN GLYTPAQAFT TFRDNSNQEL
001: MFLSSTDQRS PSNNNPSSSS SFLHLTNSCD ELGQSHLSTF SIRDYAFSYR TKNIKKSWPF SSTSLQLCLN HGLTDPLPPI QPPEVKKPNI THVEAVSHKR
101: KSEKLGSYQI LVETTKQGFE NGLLASGSKS KIQVAMVNKN PRKKCGLIVK PGACVDSGGK EDHSSLFSAS DSMALRTCPI CKTFSSASNT TLNAHIDQCL
201: SVDSGQQPIR KPNRPKTKPR LKVKTMTDIY ASAKEGTLED LDKRNGTKWA MISSYSNRVV SDDKPEVSNK VKKRSVSRAR IDEDAAGIGP VYIDAKGQKL
301: RILSKFNEKA SDPSRREHEE VCEKKSSSEG KGGKSFRKKL WGEKHYKHRK LVPQNRKLTV RKSNASEIPE YRRGYSKEGK DFERSETSGP GQGRIFNQRM
401: LTKRSLSRHG KKNGTDICES ENWNSLSEDP LVLRSPSHVS TDLSETVSSP LNSIGSWRVC GESQVSGKSW ALSRNRSIES DLFVANPLRC LTPVARGVMK
501: FKKARMDFSE NEDEDIGKWE SEMTQERELS DYDGWDDDDG ETDKVALSSN PSFSGEDNDY ESYEETGDNK GGDDMLDKTK DADVEFESMV YEKTGCETAE
601: QESSFMEVDP IPIPGPPGSF LPSPWDMMGT DAVEHHGNSS VITSQVHSSQ DQFDLTDRNS SESPVSAISN FAAPETQTLS LHNIITTDKR PSRFRDNDQS
701: CCCQRKEKAL EDTTFCQPPP PQMIQQDLDF LSKSVPAVPS TPNPVLRLMG KDLMVINQRE EPSHNESSPK PTSQFLDLSK TQQASPSVNL LHPPYSGNGY
801: FDTNTSFYNI P
101: KSEKLGSYQI LVETTKQGFE NGLLASGSKS KIQVAMVNKN PRKKCGLIVK PGACVDSGGK EDHSSLFSAS DSMALRTCPI CKTFSSASNT TLNAHIDQCL
201: SVDSGQQPIR KPNRPKTKPR LKVKTMTDIY ASAKEGTLED LDKRNGTKWA MISSYSNRVV SDDKPEVSNK VKKRSVSRAR IDEDAAGIGP VYIDAKGQKL
301: RILSKFNEKA SDPSRREHEE VCEKKSSSEG KGGKSFRKKL WGEKHYKHRK LVPQNRKLTV RKSNASEIPE YRRGYSKEGK DFERSETSGP GQGRIFNQRM
401: LTKRSLSRHG KKNGTDICES ENWNSLSEDP LVLRSPSHVS TDLSETVSSP LNSIGSWRVC GESQVSGKSW ALSRNRSIES DLFVANPLRC LTPVARGVMK
501: FKKARMDFSE NEDEDIGKWE SEMTQERELS DYDGWDDDDG ETDKVALSSN PSFSGEDNDY ESYEETGDNK GGDDMLDKTK DADVEFESMV YEKTGCETAE
601: QESSFMEVDP IPIPGPPGSF LPSPWDMMGT DAVEHHGNSS VITSQVHSSQ DQFDLTDRNS SESPVSAISN FAAPETQTLS LHNIITTDKR PSRFRDNDQS
701: CCCQRKEKAL EDTTFCQPPP PQMIQQDLDF LSKSVPAVPS TPNPVLRLMG KDLMVINQRE EPSHNESSPK PTSQFLDLSK TQQASPSVNL LHPPYSGNGY
801: FDTNTSFYNI P
Arabidopsis Description
HAP8Hapless 8 [Source:UniProtKB/TrEMBL;Acc:Q9FH14]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.