Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr4P32570_001 | |
| GSMUA_Achr6P24690_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G56250.1 | GSMUA_Achr4P32570_001 | AT1G49850.1 | 21798944 |
| AT5G56250.1 | GSMUA_Achr6P24690_001 | AT1G49850.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P01620_001 | Banana | nucleus | 45.02 | 44.91 |
| GSMUA_Achr10P... | Banana | nucleus | 36.16 | 41.66 |
| GSMUA_Achr5P04160_001 | Banana | nucleus | 29.91 | 40.65 |
| GSMUA_Achr3P10940_001 | Banana | nucleus | 32.36 | 31.27 |
| OQU81762 | Sorghum | nucleus | 29.67 | 30.34 |
| Zm00001d003333_P005 | Maize | nucleus | 29.67 | 30.27 |
| Zm00001d025668_P005 | Maize | nucleus | 29.19 | 29.78 |
| Os04t0471400-01 | Rice | nucleus | 29.11 | 29.7 |
| GSMUA_Achr7P20270_001 | Banana | nucleus | 29.91 | 28.72 |
| TraesCS2D01G332100.1 | Wheat | nucleus | 27.93 | 28.58 |
| TraesCS2A01G330900.1 | Wheat | nucleus | 27.93 | 28.56 |
| TraesCS2B01G351400.1 | Wheat | nucleus | 27.29 | 27.98 |
| GSMUA_Achr10P... | Banana | nucleus | 23.81 | 26.66 |
| CDY06514 | Canola | nucleus, plastid | 13.92 | 25.54 |
| Bra035611.1-P | Field mustard | nucleus, plastid | 14.4 | 24.97 |
| AT5G56250.1 | Thale cress | nucleus | 15.82 | 24.66 |
| CDY20740 | Canola | plastid | 14.24 | 24.36 |
| CDY36786 | Canola | nucleus, plastid | 13.92 | 23.37 |
| Bra028941.1-P | Field mustard | nucleus, plastid | 13.92 | 23.37 |
| CDY36785 | Canola | nucleus | 10.6 | 23.1 |
| CDY62101 | Canola | nucleus | 12.42 | 22.95 |
| CDY11950 | Canola | nucleus | 13.77 | 22.89 |
| CDY36783 | Canola | cytosol | 2.06 | 21.85 |
| CDY06515 | Canola | nucleus, plastid | 15.35 | 21.46 |
| CDY11951 | Canola | nucleus, plastid | 14.95 | 21.19 |
| Bra035610.1-P | Field mustard | nucleus, plastid | 15.98 | 21.09 |
| CDY65749 | Canola | nucleus | 14.24 | 20.41 |
| Solyc07g066200.2.1 | Tomato | nucleus | 21.6 | 20.37 |
| CDY32802 | Canola | nucleus | 9.65 | 20.33 |
| Bra002831.1-P | Field mustard | nucleus | 9.65 | 20.33 |
| Bra028942.1-P | Field mustard | nucleus | 15.27 | 20.13 |
| PGSC0003DMT400056953 | Potato | nucleus | 22.07 | 20.0 |
| AT5G56240.3 | Thale cress | nucleus | 15.27 | 19.55 |
| CDY17406 | Canola | nucleus, plastid | 14.32 | 19.4 |
| CDY32803 | Canola | nucleus | 14.48 | 19.26 |
| Bra002832.1-P | Field mustard | nucleus | 14.64 | 19.09 |
| VIT_19s0015g01810.t01 | Wine grape | nucleus | 20.97 | 19.05 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P12690_001 | EnsemblPlants:GSMUA_Achr9T12690_001 | EnsemblPlantsGene:GSMUA_Achr9G12690_001 | PANTHER:PTHR35767 | PANTHER:PTHR35767:SF1 | SEG:seg |
| UniParc:UPI0002955409 | UniProt:M0TZS8 | MapMan:35.2 | : | : | : |
Description
Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G12690_001]
Coordinates
chr9:+:8249251..8254903
Molecular Weight (calculated)
137790.0 Da
IEP (calculated)
8.906
GRAVY (calculated)
-0.528
Length
1264 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLSAKSPLDP PCSSKVPAPK TGETVSEKLA SRERDPILGQ TPTPNFSIRD YVFTSRSKGI ETSWPFTQHF LQLCLKHGVK DPLPPFEPPD LVRVQCWSKG
0101: VESQQSVIRP EIEQIPVHIG PQEKAVNIRR DLCSPIETQP PDGRSATCQR FRTDELTHSG ADIGSIITRD QVEGTSAAIG GISCSFAVNR DVFEAPSDID
0201: VVEPTKKLGS SREPSEKKCR LIVRLGVISD SSRAEDIKSS SSTVSDPMAS KVCPVCKMFS STSNTTLNAH IDQCLSMESN TKCCSSKVVK PKAKPRKKRL
0301: MVDIYTTAPR CTLEDLDKRN GSHWAVELAF AAAPSVEVDT ETKKPKLVLV GSGEGIKEGA VYVDSNGVKL GILSKLSSTS QSKEELKLQE HDKVVRTGKS
0401: FLIGKKKHFK AKYSKKMKMK SQRKKLNSFM LLKAKMQTSV EGDCDGETHH ENGESLLHIS DPGNLANSRP ACLRQWICSR RSDLPKKLAS KNAHSASDNT
0501: ALVTRSMLTE NSRPDAYISS VSLSHHLKFS RLSEDLTSSP GSKNIDILSK TVHPMDDGMK VSEKLTISAS RWSSESTEKN SLLPRVSKSS GNFESSSRTE
0601: AKETAPSIQH RPDTSSDRTN IPSIHCPSAK DQIVSTLMKN DLVRRSPFNL QARKGDLSVK PDTCKKFRKH RSILRSGKIR AKFQSATNGV HNKGVLAPAA
0701: DIARASKTLG SCELNHSCVV GSGTGEMTND ALPGTKDVPE FDKKDEGSTL EEQKHSNHLE TKYHGPDVQN LDMQVEVLDS GNHVRKPSSE TAGGNLLSND
0801: TVCSESLQAA SDCQSISKSE VNTGQLMQIS EKQLVECTVE TMSIQESSGC STSHGNAGHE IRQKSSSITS VRTTTNEELV GDGKPCGSPD STASTISLPS
0901: PKDLKYTDSD ANVNLPAEIS GCMVDDKTFC CSCRESLSRE FQILQPNATH RTPKVKQVSK LFARPRVSSS FNSCQNHRIN TTVISNLQAA GQPTTSKGLS
1001: DCAVKVPTCS VLGSAIPSSQ SQNRSISNPI LRLMGKNLMV MNNEEFVQPQ RTVLEYPPNV NFLSPLGFAL NTNHSKQENF RYHHKIFSGP PAFDATASVG
1101: EHQFPICMPS APMAGFSVTP LHTAFVPRLD HHTWQKNACR RSNSSPASCI MNEVLVIDDP IEFERRPVTS LSSPISTLPF ATSGLNPLSQ RPFSCVSSQC
1201: QIRYLRGGSR PLLPKPSTGI NANLTKSGSI TEGHGPLPPS PFLLQTATAA HMQSSVYYSQ LHRS
0101: VESQQSVIRP EIEQIPVHIG PQEKAVNIRR DLCSPIETQP PDGRSATCQR FRTDELTHSG ADIGSIITRD QVEGTSAAIG GISCSFAVNR DVFEAPSDID
0201: VVEPTKKLGS SREPSEKKCR LIVRLGVISD SSRAEDIKSS SSTVSDPMAS KVCPVCKMFS STSNTTLNAH IDQCLSMESN TKCCSSKVVK PKAKPRKKRL
0301: MVDIYTTAPR CTLEDLDKRN GSHWAVELAF AAAPSVEVDT ETKKPKLVLV GSGEGIKEGA VYVDSNGVKL GILSKLSSTS QSKEELKLQE HDKVVRTGKS
0401: FLIGKKKHFK AKYSKKMKMK SQRKKLNSFM LLKAKMQTSV EGDCDGETHH ENGESLLHIS DPGNLANSRP ACLRQWICSR RSDLPKKLAS KNAHSASDNT
0501: ALVTRSMLTE NSRPDAYISS VSLSHHLKFS RLSEDLTSSP GSKNIDILSK TVHPMDDGMK VSEKLTISAS RWSSESTEKN SLLPRVSKSS GNFESSSRTE
0601: AKETAPSIQH RPDTSSDRTN IPSIHCPSAK DQIVSTLMKN DLVRRSPFNL QARKGDLSVK PDTCKKFRKH RSILRSGKIR AKFQSATNGV HNKGVLAPAA
0701: DIARASKTLG SCELNHSCVV GSGTGEMTND ALPGTKDVPE FDKKDEGSTL EEQKHSNHLE TKYHGPDVQN LDMQVEVLDS GNHVRKPSSE TAGGNLLSND
0801: TVCSESLQAA SDCQSISKSE VNTGQLMQIS EKQLVECTVE TMSIQESSGC STSHGNAGHE IRQKSSSITS VRTTTNEELV GDGKPCGSPD STASTISLPS
0901: PKDLKYTDSD ANVNLPAEIS GCMVDDKTFC CSCRESLSRE FQILQPNATH RTPKVKQVSK LFARPRVSSS FNSCQNHRIN TTVISNLQAA GQPTTSKGLS
1001: DCAVKVPTCS VLGSAIPSSQ SQNRSISNPI LRLMGKNLMV MNNEEFVQPQ RTVLEYPPNV NFLSPLGFAL NTNHSKQENF RYHHKIFSGP PAFDATASVG
1101: EHQFPICMPS APMAGFSVTP LHTAFVPRLD HHTWQKNACR RSNSSPASCI MNEVLVIDDP IEFERRPVTS LSSPISTLPF ATSGLNPLSQ RPFSCVSSQC
1201: QIRYLRGGSR PLLPKPSTGI NANLTKSGSI TEGHGPLPPS PFLLQTATAA HMQSSVYYSQ LHRS
001: MFLSSTDQRS PSNNNPSSSS SFLHLTNSCD ELGQSHLSTF SIRDYAFSYR TKNIKKSWPF SSTSLQLCLN HGLTDPLPPI QPPEVKKPNI THVEAVSHKR
101: KSEKLGSYQI LVETTKQGFE NGLLASGSKS KIQVAMVNKN PRKKCGLIVK PGACVDSGGK EDHSSLFSAS DSMALRTCPI CKTFSSASNT TLNAHIDQCL
201: SVDSGQQPIR KPNRPKTKPR LKVKTMTDIY ASAKEGTLED LDKRNGTKWA MISSYSNRVV SDDKPEVSNK VKKRSVSRAR IDEDAAGIGP VYIDAKGQKL
301: RILSKFNEKA SDPSRREHEE VCEKKSSSEG KGGKSFRKKL WGEKHYKHRK LVPQNRKLTV RKSNASEIPE YRRGYSKEGK DFERSETSGP GQGRIFNQRM
401: LTKRSLSRHG KKNGTDICES ENWNSLSEDP LVLRSPSHVS TDLSETVSSP LNSIGSWRVC GESQVSGKSW ALSRNRSIES DLFVANPLRC LTPVARGVMK
501: FKKARMDFSE NEDEDIGKWE SEMTQERELS DYDGWDDDDG ETDKVALSSN PSFSGEDNDY ESYEETGDNK GGDDMLDKTK DADVEFESMV YEKTGCETAE
601: QESSFMEVDP IPIPGPPGSF LPSPWDMMGT DAVEHHGNSS VITSQVHSSQ DQFDLTDRNS SESPVSAISN FAAPETQTLS LHNIITTDKR PSRFRDNDQS
701: CCCQRKEKAL EDTTFCQPPP PQMIQQDLDF LSKSVPAVPS TPNPVLRLMG KDLMVINQRE EPSHNESSPK PTSQFLDLSK TQQASPSVNL LHPPYSGNGY
801: FDTNTSFYNI P
101: KSEKLGSYQI LVETTKQGFE NGLLASGSKS KIQVAMVNKN PRKKCGLIVK PGACVDSGGK EDHSSLFSAS DSMALRTCPI CKTFSSASNT TLNAHIDQCL
201: SVDSGQQPIR KPNRPKTKPR LKVKTMTDIY ASAKEGTLED LDKRNGTKWA MISSYSNRVV SDDKPEVSNK VKKRSVSRAR IDEDAAGIGP VYIDAKGQKL
301: RILSKFNEKA SDPSRREHEE VCEKKSSSEG KGGKSFRKKL WGEKHYKHRK LVPQNRKLTV RKSNASEIPE YRRGYSKEGK DFERSETSGP GQGRIFNQRM
401: LTKRSLSRHG KKNGTDICES ENWNSLSEDP LVLRSPSHVS TDLSETVSSP LNSIGSWRVC GESQVSGKSW ALSRNRSIES DLFVANPLRC LTPVARGVMK
501: FKKARMDFSE NEDEDIGKWE SEMTQERELS DYDGWDDDDG ETDKVALSSN PSFSGEDNDY ESYEETGDNK GGDDMLDKTK DADVEFESMV YEKTGCETAE
601: QESSFMEVDP IPIPGPPGSF LPSPWDMMGT DAVEHHGNSS VITSQVHSSQ DQFDLTDRNS SESPVSAISN FAAPETQTLS LHNIITTDKR PSRFRDNDQS
701: CCCQRKEKAL EDTTFCQPPP PQMIQQDLDF LSKSVPAVPS TPNPVLRLMG KDLMVINQRE EPSHNESSPK PTSQFLDLSK TQQASPSVNL LHPPYSGNGY
801: FDTNTSFYNI P
Arabidopsis Description
HAP8Hapless 8 [Source:UniProtKB/TrEMBL;Acc:Q9FH14]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.