Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr4P32570_001 | |
| GSMUA_Achr6P24690_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G56250.1 | GSMUA_Achr4P32570_001 | AT1G49850.1 | 21798944 |
| AT5G56250.1 | GSMUA_Achr6P24690_001 | AT1G49850.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P12690_001 | Banana | nucleus | 44.91 | 45.02 |
| GSMUA_Achr10P... | Banana | nucleus | 38.04 | 43.94 |
| GSMUA_Achr5P04160_001 | Banana | nucleus | 30.31 | 41.29 |
| Os04t0471400-01 | Rice | nucleus | 30.62 | 31.32 |
| GSMUA_Achr3P10940_001 | Banana | nucleus | 31.49 | 30.5 |
| OQU81762 | Sorghum | nucleus | 29.76 | 30.5 |
| Zm00001d003333_P005 | Maize | nucleus | 29.6 | 30.27 |
| Zm00001d025668_P005 | Maize | nucleus | 29.44 | 30.1 |
| GSMUA_Achr7P20270_001 | Banana | nucleus | 30.86 | 29.71 |
| TraesCS2A01G330900.1 | Wheat | nucleus | 27.39 | 28.07 |
| TraesCS2D01G332100.1 | Wheat | nucleus | 27.15 | 27.85 |
| GSMUA_Achr10P... | Banana | nucleus | 24.55 | 27.55 |
| TraesCS2B01G351400.1 | Wheat | nucleus | 26.6 | 27.33 |
| CDY36785 | Canola | nucleus | 10.73 | 23.45 |
| Bra035611.1-P | Field mustard | nucleus, plastid | 13.26 | 23.05 |
| CDY20740 | Canola | plastid | 13.34 | 22.87 |
| CDY06514 | Canola | nucleus, plastid | 12.31 | 22.64 |
| AT5G56250.1 | Thale cress | nucleus | 14.21 | 22.19 |
| CDY62101 | Canola | nucleus | 11.68 | 21.64 |
| CDY11950 | Canola | nucleus | 12.94 | 21.58 |
| Bra028941.1-P | Field mustard | nucleus, plastid | 12.71 | 21.38 |
| CDY36786 | Canola | nucleus, plastid | 12.71 | 21.38 |
| CDY11951 | Canola | nucleus, plastid | 14.52 | 20.63 |
| CDY06515 | Canola | nucleus, plastid | 14.36 | 20.13 |
| Solyc07g066200.2.1 | Tomato | nucleus | 20.92 | 19.78 |
| CDY32802 | Canola | nucleus | 9.31 | 19.67 |
| Bra002831.1-P | Field mustard | nucleus | 9.31 | 19.67 |
| Bra035610.1-P | Field mustard | nucleus, plastid | 14.76 | 19.52 |
| CDY17406 | Canola | nucleus, plastid | 14.29 | 19.4 |
| PGSC0003DMT400056953 | Potato | nucleus | 21.31 | 19.35 |
| Bra028942.1-P | Field mustard | nucleus | 14.52 | 19.19 |
| VIT_19s0015g01810.t01 | Wine grape | nucleus | 20.92 | 19.05 |
| Bra002832.1-P | Field mustard | nucleus | 14.29 | 18.68 |
| AT5G56240.3 | Thale cress | nucleus | 14.52 | 18.64 |
| CDY32803 | Canola | nucleus | 13.97 | 18.63 |
| CDY65749 | Canola | nucleus | 12.87 | 18.48 |
| CDY36783 | Canola | cytosol | 1.58 | 16.81 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P01620_001 | EnsemblPlants:GSMUA_Achr4T01620_001 | EnsemblPlantsGene:GSMUA_Achr4G01620_001 | PANTHER:PTHR35767 | PANTHER:PTHR35767:SF1 | SEG:seg |
| UniParc:UPI00029597DC | UniProt:M0SK79 | MapMan:35.2 | : | : | : |
Description
Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G01620_001]
Coordinates
chr4:+:1361630..1367189
Molecular Weight (calculated)
139359.0 Da
IEP (calculated)
8.766
GRAVY (calculated)
-0.596
Length
1267 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLSTKSTPHP SCSSKLPAPG TGECASEKLP FQERNPILEE TPTPNFSIRD YAFATRSKGL ESSWPFTPHF LQLFLKHGVK DLLPPFETPS LVRVQCSRKG
0101: SESVQPVICS EIEQILTHAD PPVEAAIVRQ QSCSSLEKPS PDRKALSCQR ICKDELAHCD AETGWIRNHE QVERTSSETG GPSSSLSKAP SEIDVFEHTK
0201: SLQSSHESLE KKCRLIVKLG VISRSCQAED IISNSSTVSD HMASKVCPVC KTFSSTSNTT LNAHIDQCLS MVSNNNWVSN KLLKPKVKPR KKRLMVDIYA
0301: TAPHCTLEDL DRRNGTNWAI ELAFTTAATV GVDVEAKKPK LPTDSRDSVN EGAVYVDSNG IKLRILSKLN DTPELKKERK FLKHAEVIET TKKNFIRKKK
0401: HLTTKYSKKM KVKAQRKKLS SYLLLKAQMK TAHEGDCPMD TCYENEESIN PEIFPKGSGS ASSRQWMCSR QSDILKKPLR KNVHCVSDNN VTRSRLAKSS
0501: HLDPGKSSVA ISDQLKFSRL SEDFVSSPKM IPSMVNGFEN SEKLPISSCK WSSKSTVKHG LLLRILKSSG SSLSQRTKLS SKISHSSIED QINLTWQQDD
0601: SVKRPSINLE AGKGDLSEKS FSFKTFRKHR SISKSGVEFR TAIRRGLHGP GVDISRTSNS LGSHKFGCSK KNKHSALKRL RLETENHDPD SENLNMQLEV
0701: FGSGNCASKS SMEMATANPS HNGIVSSENL QATFGARSEL SPSAEQVQPI SKSKAHKEQL VEGSEKQEVN CGSLPSEDID GLNSQITDEM AVRGEKGSCV
0801: IELTECTADT MSIQESSGCL TSHEDVGPQM PQKGTSITSV ITTTNDATNL ASEDEPCGSP VSTASTLSLP SSEDSKYTDS EAEPLAIAIN SQDKSDLIVP
0901: ITEDTVAAAE RNAEGRDHEV KENLPAKEPN HSLENKLFCC SCRESLSRES QLLRSNAAHR TTKGKQLSNL FARPIVSSSF SSYKNQRTNT MASSSLQPDR
1001: QPTFVKRSSD SSAMVPTSSV ATPSSQPHNQ SISSPILRLM GKNLMVVKDE ELVQPQSRVL DYPSHVNFLS PPGFGSTNSL LKQENFRHHH HIFGGSPVLD
1101: SAVSMDEHKF PICLPSTPMA GYSVTPQHAF FVPRPDQQIQ QKNAYKRAKS SPSPYMMNEL IVISDFPETD KEPTLSSPTS TLPFAASGLN PSSQRPFTCF
1201: SSQNHIRDIP GGLRPLLPNP FTGVNTSLMR RGSTSEGRGP LLPSRFVFHS PAAARTHPSL YYSQTLR
0101: SESVQPVICS EIEQILTHAD PPVEAAIVRQ QSCSSLEKPS PDRKALSCQR ICKDELAHCD AETGWIRNHE QVERTSSETG GPSSSLSKAP SEIDVFEHTK
0201: SLQSSHESLE KKCRLIVKLG VISRSCQAED IISNSSTVSD HMASKVCPVC KTFSSTSNTT LNAHIDQCLS MVSNNNWVSN KLLKPKVKPR KKRLMVDIYA
0301: TAPHCTLEDL DRRNGTNWAI ELAFTTAATV GVDVEAKKPK LPTDSRDSVN EGAVYVDSNG IKLRILSKLN DTPELKKERK FLKHAEVIET TKKNFIRKKK
0401: HLTTKYSKKM KVKAQRKKLS SYLLLKAQMK TAHEGDCPMD TCYENEESIN PEIFPKGSGS ASSRQWMCSR QSDILKKPLR KNVHCVSDNN VTRSRLAKSS
0501: HLDPGKSSVA ISDQLKFSRL SEDFVSSPKM IPSMVNGFEN SEKLPISSCK WSSKSTVKHG LLLRILKSSG SSLSQRTKLS SKISHSSIED QINLTWQQDD
0601: SVKRPSINLE AGKGDLSEKS FSFKTFRKHR SISKSGVEFR TAIRRGLHGP GVDISRTSNS LGSHKFGCSK KNKHSALKRL RLETENHDPD SENLNMQLEV
0701: FGSGNCASKS SMEMATANPS HNGIVSSENL QATFGARSEL SPSAEQVQPI SKSKAHKEQL VEGSEKQEVN CGSLPSEDID GLNSQITDEM AVRGEKGSCV
0801: IELTECTADT MSIQESSGCL TSHEDVGPQM PQKGTSITSV ITTTNDATNL ASEDEPCGSP VSTASTLSLP SSEDSKYTDS EAEPLAIAIN SQDKSDLIVP
0901: ITEDTVAAAE RNAEGRDHEV KENLPAKEPN HSLENKLFCC SCRESLSRES QLLRSNAAHR TTKGKQLSNL FARPIVSSSF SSYKNQRTNT MASSSLQPDR
1001: QPTFVKRSSD SSAMVPTSSV ATPSSQPHNQ SISSPILRLM GKNLMVVKDE ELVQPQSRVL DYPSHVNFLS PPGFGSTNSL LKQENFRHHH HIFGGSPVLD
1101: SAVSMDEHKF PICLPSTPMA GYSVTPQHAF FVPRPDQQIQ QKNAYKRAKS SPSPYMMNEL IVISDFPETD KEPTLSSPTS TLPFAASGLN PSSQRPFTCF
1201: SSQNHIRDIP GGLRPLLPNP FTGVNTSLMR RGSTSEGRGP LLPSRFVFHS PAAARTHPSL YYSQTLR
001: MFLSTENPPN DPLSSSSSPF LQHLTSSSHE LGQSHLSNFS IRDYAYSNRK NNIKNNWPFS SKSLQLFSTH GVTNPLPPFQ KFSTVSSKFE TTASPSSGKQ
101: IVSSYVHQGR DLDLAKLGLN QTVAETSSKG VCSQSRIIEN GLFPSTSVSK SEVEILVATT SNKKDNHSRK CGRGMVKSKE DSCAGLVTTS ESIMASKTCP
201: ICKTFSSASN TTLNAHIDQC LSVDSALLPP VVFSKPNKPR SKPPRVKVKT MVDIYASAKQ GTLEDLDRRN GTKWVSILSY SNRVVADKSE VSKKRKVSPV
301: GVGPVYIDAK GQKLRILSGF SEKKSSTTPL REQHEDGSSD KKCLGQGSKG TNKSLRKIRR GKKPHKFVKL TNHKADGPEQ IRGVQRGFSG EGSHMGHHRR
401: IYNQRMLAKR GLVSKKLNEK GHELSEDDED TWSGGDPTVL RGTDLSATDS YPLKKQKLGS EVAGRKKTLF RSQSAQSRSF RVPQSEKEDE SLEGVNINRL
501: KKSVASFQED KYPPGKKFCS DASPRGTSMR KFSPPFVPNA WRRLSMPVEL KKARLDFSEE KDDEETGKWE SEMTHERELR DDDYVSGDDG ENNEVLLRSN
601: PSSSGYDDYN DDDEESSEEE GDNNKRAHVL DQTDYTGAEF YQSESDSPTS IEILPSERAM YYSEAGNMIY GQTSCKEDER FDSEVGQGSL FVEVDTIPIP
701: GPPGSFLPSP RDMGFDENLG NSSVITSQVQ SSMDQLDRNS SESPVSAVSN FAAGRLNFPA ELSSFRENFS PDIAMSYSTT PMSFCVPSHH GTITEAEPIT
801: IDKTISPSRF RNNDQESCCC QRKERISEGI TLNHQGSHLL QRRAASSSNT MNLTNSPTRL DPNHPFEQSP YKTQQALDLQ MSKFSSRKSL NAVVPPSPSN
901: PVLRLMGKDL MVMNQGEADE EASRSSLTPN PQFVDPPCGG TGLYFNTGLY LRNSFDSTHQ PQVQAQQQSQ AAAFRNNFDH VRYFSPS
101: IVSSYVHQGR DLDLAKLGLN QTVAETSSKG VCSQSRIIEN GLFPSTSVSK SEVEILVATT SNKKDNHSRK CGRGMVKSKE DSCAGLVTTS ESIMASKTCP
201: ICKTFSSASN TTLNAHIDQC LSVDSALLPP VVFSKPNKPR SKPPRVKVKT MVDIYASAKQ GTLEDLDRRN GTKWVSILSY SNRVVADKSE VSKKRKVSPV
301: GVGPVYIDAK GQKLRILSGF SEKKSSTTPL REQHEDGSSD KKCLGQGSKG TNKSLRKIRR GKKPHKFVKL TNHKADGPEQ IRGVQRGFSG EGSHMGHHRR
401: IYNQRMLAKR GLVSKKLNEK GHELSEDDED TWSGGDPTVL RGTDLSATDS YPLKKQKLGS EVAGRKKTLF RSQSAQSRSF RVPQSEKEDE SLEGVNINRL
501: KKSVASFQED KYPPGKKFCS DASPRGTSMR KFSPPFVPNA WRRLSMPVEL KKARLDFSEE KDDEETGKWE SEMTHERELR DDDYVSGDDG ENNEVLLRSN
601: PSSSGYDDYN DDDEESSEEE GDNNKRAHVL DQTDYTGAEF YQSESDSPTS IEILPSERAM YYSEAGNMIY GQTSCKEDER FDSEVGQGSL FVEVDTIPIP
701: GPPGSFLPSP RDMGFDENLG NSSVITSQVQ SSMDQLDRNS SESPVSAVSN FAAGRLNFPA ELSSFRENFS PDIAMSYSTT PMSFCVPSHH GTITEAEPIT
801: IDKTISPSRF RNNDQESCCC QRKERISEGI TLNHQGSHLL QRRAASSSNT MNLTNSPTRL DPNHPFEQSP YKTQQALDLQ MSKFSSRKSL NAVVPPSPSN
901: PVLRLMGKDL MVMNQGEADE EASRSSLTPN PQFVDPPCGG TGLYFNTGLY LRNSFDSTHQ PQVQAQQQSQ AAAFRNNFDH VRYFSPS
Arabidopsis Description
BEST Arabidopsis thaliana protein match is: hapless 8 (TAIR:AT5G56250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: /.../BLink). [Source:TAIR;Acc:AT5G56240]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.