Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- cytosol 1
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G56250.1 | CDY16531 | AT1G49850.1 | 21798944 |
| AT5G56250.1 | CDY20854 | AT1G49850.1 | 21798944 |
| AT5G56250.1 | CDY32837 | AT1G49850.1 | 21798944 |
| AT5G56250.1 | CDY61552 | AT1G49850.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20740 | Canola | plastid | 79.68 | 74.29 |
| AT5G56250.1 | Thale cress | nucleus | 62.55 | 53.14 |
| CDY11950 | Canola | nucleus | 56.6 | 51.32 |
| CDY36786 | Canola | nucleus, plastid | 55.15 | 50.46 |
| CDY62101 | Canola | nucleus | 47.02 | 47.37 |
| CDY32802 | Canola | nucleus | 37.88 | 43.5 |
| CDY36785 | Canola | nucleus | 28.16 | 33.45 |
| CDY06515 | Canola | nucleus, plastid | 42.24 | 32.19 |
| CDY11951 | Canola | nucleus, plastid | 41.36 | 31.95 |
| CDY17406 | Canola | nucleus, plastid | 41.65 | 30.76 |
| CDY32803 | Canola | nucleus | 41.65 | 30.21 |
| CDY65749 | Canola | nucleus | 38.46 | 30.05 |
| CDY36783 | Canola | cytosol | 4.35 | 25.21 |
| GSMUA_Achr5P04160_001 | Banana | nucleus | 21.77 | 16.13 |
| VIT_19s0015g01810.t01 | Wine grape | nucleus | 31.64 | 15.67 |
| Solyc07g066200.2.1 | Tomato | nucleus | 29.61 | 15.22 |
| GSMUA_Achr10P... | Banana | nucleus | 23.66 | 14.86 |
| PGSC0003DMT400056953 | Potato | nucleus | 29.46 | 14.55 |
| GSMUA_Achr9P12690_001 | Banana | nucleus | 25.54 | 13.92 |
| Os04t0471400-01 | Rice | nucleus | 24.82 | 13.8 |
| TraesCS2D01G332100.1 | Wheat | nucleus | 24.53 | 13.68 |
| Zm00001d003333_P005 | Maize | nucleus | 24.53 | 13.64 |
| OQU81762 | Sorghum | nucleus | 24.38 | 13.59 |
| TraesCS2A01G330900.1 | Wheat | nucleus | 24.38 | 13.59 |
| Zm00001d025668_P005 | Maize | nucleus | 24.24 | 13.48 |
| GSMUA_Achr10P... | Banana | nucleus | 22.06 | 13.46 |
| TraesCS2B01G351400.1 | Wheat | nucleus | 23.95 | 13.38 |
| GSMUA_Achr3P10940_001 | Banana | nucleus | 24.38 | 12.84 |
| GSMUA_Achr4P01620_001 | Banana | nucleus | 22.64 | 12.31 |
| GSMUA_Achr7P20270_001 | Banana | nucleus | 22.21 | 11.63 |
Protein Annotations
| EnsemblPlants:CDY06514 | EnsemblPlantsGene:GSBRNA2T00122624001 | PANTHER:PTHR35767 | PANTHER:PTHR35767:SF1 | ProteinID:CDY06514 | ProteinID:CDY06514.1 |
| SEG:seg | UniParc:UPI0004EECA2B | MapMan:35.2 | : | : | : |
Description
BnaC02g12380D
Coordinates
chrLK031971:+:23591..26091
Molecular Weight (calculated)
76250.7 Da
IEP (calculated)
6.474
GRAVY (calculated)
-0.760
Length
689 amino acids
Sequence
(BLAST)
(BLAST)
001: MFLSSTDEGS PNNPSSSSSF LHLTNSSHEL GQSHLSSFSI RDYAFSYRTK NIQKSWPFSS TSLQLCLKHG VTDPLPPMQP LGSEAKPNVI PAEERSCKRK
101: LKKLGSNHVL AETEQVFLAS SLKCKVEVAV VNKNHRSTKE ADDCLYALSE SMPLRTCPIC KTFSSASNTT LNAHMDQCLS VDSGQHPMSK PRTKPRLKVK
201: TLVDIYATAK GCTLEDLDKR NGTKWSVVSS YSSQVVSDNT LKGKKRVGNE DDAGIGPVYI DAKGQKLRIL SDSPRKHVED VSEKKPSNEC QGKRLGGKKH
301: YKHCKVAPQS RKLTDRQGNA SEECRGMERS ETPGPRQRIV TRSCLSRNEN KKGRSICDQP SENGHSLSGE PLVLRGSSHA SVDLSETVSS PLRCSMHVDK
401: VFASSPKGFL KLKKARLDLS ENEDEDSGRW ESEMTQEREL THSDDNEEAY KVFLSSDPSV SSGEEDDNEG WEVTGNNKVD DDDMFYKTDD ADAVFESSFM
501: EVDIIPIPGP PGSFLPSPWD METDATENHV NSSVITSQFQ SSHDQLDLTD RNSSESPLSA FLNFAAPETQ TFRDNEQSCC CQRKDNVFED TTFGRPAPQI
601: NQQDLDLLSK SVSKTPSVSN PVLRLMGKDL MVINQREEAS HGDPSLIPTS QFHDLSKTKQ VFPPVHPFHG PYGANSLHLD STTSSHKIP
101: LKKLGSNHVL AETEQVFLAS SLKCKVEVAV VNKNHRSTKE ADDCLYALSE SMPLRTCPIC KTFSSASNTT LNAHMDQCLS VDSGQHPMSK PRTKPRLKVK
201: TLVDIYATAK GCTLEDLDKR NGTKWSVVSS YSSQVVSDNT LKGKKRVGNE DDAGIGPVYI DAKGQKLRIL SDSPRKHVED VSEKKPSNEC QGKRLGGKKH
301: YKHCKVAPQS RKLTDRQGNA SEECRGMERS ETPGPRQRIV TRSCLSRNEN KKGRSICDQP SENGHSLSGE PLVLRGSSHA SVDLSETVSS PLRCSMHVDK
401: VFASSPKGFL KLKKARLDLS ENEDEDSGRW ESEMTQEREL THSDDNEEAY KVFLSSDPSV SSGEEDDNEG WEVTGNNKVD DDDMFYKTDD ADAVFESSFM
501: EVDIIPIPGP PGSFLPSPWD METDATENHV NSSVITSQFQ SSHDQLDLTD RNSSESPLSA FLNFAAPETQ TFRDNEQSCC CQRKDNVFED TTFGRPAPQI
601: NQQDLDLLSK SVSKTPSVSN PVLRLMGKDL MVINQREEAS HGDPSLIPTS QFHDLSKTKQ VFPPVHPFHG PYGANSLHLD STTSSHKIP
001: MFLSSTDQRS PSNNNPSSSS SFLHLTNSCD ELGQSHLSTF SIRDYAFSYR TKNIKKSWPF SSTSLQLCLN HGLTDPLPPI QPPEVKKPNI THVEAVSHKR
101: KSEKLGSYQI LVETTKQGFE NGLLASGSKS KIQVAMVNKN PRKKCGLIVK PGACVDSGGK EDHSSLFSAS DSMALRTCPI CKTFSSASNT TLNAHIDQCL
201: SVDSGQQPIR KPNRPKTKPR LKVKTMTDIY ASAKEGTLED LDKRNGTKWA MISSYSNRVV SDDKPEVSNK VKKRSVSRAR IDEDAAGIGP VYIDAKGQKL
301: RILSKFNEKA SDPSRREHEE VCEKKSSSEG KGGKSFRKKL WGEKHYKHRK LVPQNRKLTV RKSNASEIPE YRRGYSKEGK DFERSETSGP GQGRIFNQRM
401: LTKRSLSRHG KKNGTDICES ENWNSLSEDP LVLRSPSHVS TDLSETVSSP LNSIGSWRVC GESQVSGKSW ALSRNRSIES DLFVANPLRC LTPVARGVMK
501: FKKARMDFSE NEDEDIGKWE SEMTQERELS DYDGWDDDDG ETDKVALSSN PSFSGEDNDY ESYEETGDNK GGDDMLDKTK DADVEFESMV YEKTGCETAE
601: QESSFMEVDP IPIPGPPGSF LPSPWDMMGT DAVEHHGNSS VITSQVHSSQ DQFDLTDRNS SESPVSAISN FAAPETQTLS LHNIITTDKR PSRFRDNDQS
701: CCCQRKEKAL EDTTFCQPPP PQMIQQDLDF LSKSVPAVPS TPNPVLRLMG KDLMVINQRE EPSHNESSPK PTSQFLDLSK TQQASPSVNL LHPPYSGNGY
801: FDTNTSFYNI P
101: KSEKLGSYQI LVETTKQGFE NGLLASGSKS KIQVAMVNKN PRKKCGLIVK PGACVDSGGK EDHSSLFSAS DSMALRTCPI CKTFSSASNT TLNAHIDQCL
201: SVDSGQQPIR KPNRPKTKPR LKVKTMTDIY ASAKEGTLED LDKRNGTKWA MISSYSNRVV SDDKPEVSNK VKKRSVSRAR IDEDAAGIGP VYIDAKGQKL
301: RILSKFNEKA SDPSRREHEE VCEKKSSSEG KGGKSFRKKL WGEKHYKHRK LVPQNRKLTV RKSNASEIPE YRRGYSKEGK DFERSETSGP GQGRIFNQRM
401: LTKRSLSRHG KKNGTDICES ENWNSLSEDP LVLRSPSHVS TDLSETVSSP LNSIGSWRVC GESQVSGKSW ALSRNRSIES DLFVANPLRC LTPVARGVMK
501: FKKARMDFSE NEDEDIGKWE SEMTQERELS DYDGWDDDDG ETDKVALSSN PSFSGEDNDY ESYEETGDNK GGDDMLDKTK DADVEFESMV YEKTGCETAE
601: QESSFMEVDP IPIPGPPGSF LPSPWDMMGT DAVEHHGNSS VITSQVHSSQ DQFDLTDRNS SESPVSAISN FAAPETQTLS LHNIITTDKR PSRFRDNDQS
701: CCCQRKEKAL EDTTFCQPPP PQMIQQDLDF LSKSVPAVPS TPNPVLRLMG KDLMVINQRE EPSHNESSPK PTSQFLDLSK TQQASPSVNL LHPPYSGNGY
801: FDTNTSFYNI P
Arabidopsis Description
HAP8Hapless 8 [Source:UniProtKB/TrEMBL;Acc:Q9FH14]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.