Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- cytosol 1
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G56250.1 | CDY16531 | AT1G49850.1 | 21798944 |
| AT5G56250.1 | CDY20854 | AT1G49850.1 | 21798944 |
| AT5G56250.1 | CDY32837 | AT1G49850.1 | 21798944 |
| AT5G56250.1 | CDY61552 | AT1G49850.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028941.1-P | Field mustard | nucleus, plastid | 100.0 | 100.0 |
| CDY11950 | Canola | nucleus | 84.2 | 83.42 |
| CDY20740 | Canola | plastid | 56.97 | 58.05 |
| AT5G56250.1 | Thale cress | nucleus | 61.75 | 57.34 |
| CDY06514 | Canola | nucleus, plastid | 50.46 | 55.15 |
| CDY62101 | Canola | nucleus | 46.35 | 51.02 |
| CDY32802 | Canola | nucleus | 37.85 | 47.5 |
| CDY36785 | Canola | nucleus | 25.76 | 33.45 |
| CDY06515 | Canola | nucleus, plastid | 38.11 | 31.75 |
| CDY11951 | Canola | nucleus, plastid | 37.45 | 31.61 |
| CDY32803 | Canola | nucleus | 39.44 | 31.26 |
| CDY17406 | Canola | nucleus, plastid | 38.51 | 31.08 |
| CDY65749 | Canola | nucleus | 34.26 | 29.25 |
| CDY36783 | Canola | cytosol | 4.12 | 26.05 |
| GSMUA_Achr5P04160_001 | Banana | nucleus | 20.19 | 16.34 |
| Solyc07g066200.2.1 | Tomato | nucleus | 27.22 | 15.3 |
| VIT_19s0015g01810.t01 | Wine grape | nucleus | 28.02 | 15.17 |
| Zm00001d003333_P005 | Maize | nucleus | 24.7 | 15.01 |
| Zm00001d025668_P005 | Maize | nucleus | 24.44 | 14.85 |
| OQU81762 | Sorghum | nucleus | 24.3 | 14.81 |
| Os04t0471400-01 | Rice | nucleus | 23.9 | 14.53 |
| GSMUA_Achr10P... | Banana | nucleus | 20.98 | 14.4 |
| PGSC0003DMT400056953 | Potato | nucleus | 26.56 | 14.34 |
| TraesCS2A01G330900.1 | Wheat | nucleus | 23.51 | 14.32 |
| TraesCS2B01G351400.1 | Wheat | nucleus | 23.37 | 14.27 |
| TraesCS2D01G332100.1 | Wheat | nucleus | 23.11 | 14.09 |
| GSMUA_Achr9P12690_001 | Banana | nucleus | 23.37 | 13.92 |
| GSMUA_Achr10P... | Banana | nucleus | 20.32 | 13.55 |
| GSMUA_Achr4P01620_001 | Banana | nucleus | 21.38 | 12.71 |
| GSMUA_Achr7P20270_001 | Banana | nucleus | 21.91 | 12.54 |
| GSMUA_Achr3P10940_001 | Banana | nucleus | 20.98 | 12.08 |
Protein Annotations
| EnsemblPlants:CDY36786 | EnsemblPlantsGene:GSBRNA2T00062618001 | PANTHER:PTHR35767 | PANTHER:PTHR35767:SF1 | ProteinID:CDY36786 | ProteinID:CDY36786.1 |
| SEG:seg | UniParc:UPI000253FD9E | UniProt:A0A078HGA9 | MapMan:35.2 | : | : |
Description
BnaA03g11000DBnaA03g11000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HGA9]
Coordinates
chrLK032383:-:253300..257002
Molecular Weight (calculated)
83014.5 Da
IEP (calculated)
6.276
GRAVY (calculated)
-0.855
Length
753 amino acids
Sequence
(BLAST)
(BLAST)
001: MKNSREVNSN SGRIKCSSYP SLSTDEGSPN NPSSSSHFLH LTKPSDELGQ SHLSTFSIRG YAFSNRTKNI QKSWPFSSTS LQLCLKHGLS DPLPPIQPLG
101: PMISHPPEAS SSNKPTLTHV EAISSKRKLG RLASSDHASA EITKQGFENG SKSKTQVTTV NKTPRKKCGL VVKPGACVDG SSKEDQALRT CPICKTFSSA
201: SNTTLNAHID QCLSVDLGEQ PVSKPNKPRN HKPRLKVKTM VDIYASAKGC TLEDLDRRNG TKWAVISSYS NRVIVCDNNK SEVSNKEKKL DEDGDAGIGP
301: VYIDAKGQKL RIISEVKEKA AEPSREHEKK SFSEGKRSYK SCKKRLEGNA SEIHESRRGC SEECRGMERL ETPGTSQRRR MLRKHSLSRN ESKKGRSMCD
401: QPSENMHSLS EDPLVLKGPS LVSTDLSEAV NSQSSWRSCG DSQISGKSTN FAAPKPVDKG VMKLKKAWRF DVSENEDEDS GRWESEMTQE LELADYDDWD
501: EAEETDKGLP STRGEDNDYE SLEETGNNKG DCDMLDTIDA EFESMVLEKN GFETEEGGSS FMEVDPIPIP GPPGSFLESP WDMGTDATAT ENHGNFFQVQ
601: TSFDQLDLTD RNLSESPVSA VSNFAAPETQ TFSLHNIITT DNDQSCCCQR KENALEGTTF RQPPPHMIHQ DLLSKSVPPV PSNSGPVLRL MGKDLMVMNQ
701: REETSHGDPS TKPTSQFQDL SKTQQASPRA HLHPPYGGNG LYLDATTSFY NIP
101: PMISHPPEAS SSNKPTLTHV EAISSKRKLG RLASSDHASA EITKQGFENG SKSKTQVTTV NKTPRKKCGL VVKPGACVDG SSKEDQALRT CPICKTFSSA
201: SNTTLNAHID QCLSVDLGEQ PVSKPNKPRN HKPRLKVKTM VDIYASAKGC TLEDLDRRNG TKWAVISSYS NRVIVCDNNK SEVSNKEKKL DEDGDAGIGP
301: VYIDAKGQKL RIISEVKEKA AEPSREHEKK SFSEGKRSYK SCKKRLEGNA SEIHESRRGC SEECRGMERL ETPGTSQRRR MLRKHSLSRN ESKKGRSMCD
401: QPSENMHSLS EDPLVLKGPS LVSTDLSEAV NSQSSWRSCG DSQISGKSTN FAAPKPVDKG VMKLKKAWRF DVSENEDEDS GRWESEMTQE LELADYDDWD
501: EAEETDKGLP STRGEDNDYE SLEETGNNKG DCDMLDTIDA EFESMVLEKN GFETEEGGSS FMEVDPIPIP GPPGSFLESP WDMGTDATAT ENHGNFFQVQ
601: TSFDQLDLTD RNLSESPVSA VSNFAAPETQ TFSLHNIITT DNDQSCCCQR KENALEGTTF RQPPPHMIHQ DLLSKSVPPV PSNSGPVLRL MGKDLMVMNQ
701: REETSHGDPS TKPTSQFQDL SKTQQASPRA HLHPPYGGNG LYLDATTSFY NIP
001: MFLSSTDQRS PSNNNPSSSS SFLHLTNSCD ELGQSHLSTF SIRDYAFSYR TKNIKKSWPF SSTSLQLCLN HGLTDPLPPI QPPEVKKPNI THVEAVSHKR
101: KSEKLGSYQI LVETTKQGFE NGLLASGSKS KIQVAMVNKN PRKKCGLIVK PGACVDSGGK EDHSSLFSAS DSMALRTCPI CKTFSSASNT TLNAHIDQCL
201: SVDSGQQPIR KPNRPKTKPR LKVKTMTDIY ASAKEGTLED LDKRNGTKWA MISSYSNRVV SDDKPEVSNK VKKRSVSRAR IDEDAAGIGP VYIDAKGQKL
301: RILSKFNEKA SDPSRREHEE VCEKKSSSEG KGGKSFRKKL WGEKHYKHRK LVPQNRKLTV RKSNASEIPE YRRGYSKEGK DFERSETSGP GQGRIFNQRM
401: LTKRSLSRHG KKNGTDICES ENWNSLSEDP LVLRSPSHVS TDLSETVSSP LNSIGSWRVC GESQVSGKSW ALSRNRSIES DLFVANPLRC LTPVARGVMK
501: FKKARMDFSE NEDEDIGKWE SEMTQERELS DYDGWDDDDG ETDKVALSSN PSFSGEDNDY ESYEETGDNK GGDDMLDKTK DADVEFESMV YEKTGCETAE
601: QESSFMEVDP IPIPGPPGSF LPSPWDMMGT DAVEHHGNSS VITSQVHSSQ DQFDLTDRNS SESPVSAISN FAAPETQTLS LHNIITTDKR PSRFRDNDQS
701: CCCQRKEKAL EDTTFCQPPP PQMIQQDLDF LSKSVPAVPS TPNPVLRLMG KDLMVINQRE EPSHNESSPK PTSQFLDLSK TQQASPSVNL LHPPYSGNGY
801: FDTNTSFYNI P
101: KSEKLGSYQI LVETTKQGFE NGLLASGSKS KIQVAMVNKN PRKKCGLIVK PGACVDSGGK EDHSSLFSAS DSMALRTCPI CKTFSSASNT TLNAHIDQCL
201: SVDSGQQPIR KPNRPKTKPR LKVKTMTDIY ASAKEGTLED LDKRNGTKWA MISSYSNRVV SDDKPEVSNK VKKRSVSRAR IDEDAAGIGP VYIDAKGQKL
301: RILSKFNEKA SDPSRREHEE VCEKKSSSEG KGGKSFRKKL WGEKHYKHRK LVPQNRKLTV RKSNASEIPE YRRGYSKEGK DFERSETSGP GQGRIFNQRM
401: LTKRSLSRHG KKNGTDICES ENWNSLSEDP LVLRSPSHVS TDLSETVSSP LNSIGSWRVC GESQVSGKSW ALSRNRSIES DLFVANPLRC LTPVARGVMK
501: FKKARMDFSE NEDEDIGKWE SEMTQERELS DYDGWDDDDG ETDKVALSSN PSFSGEDNDY ESYEETGDNK GGDDMLDKTK DADVEFESMV YEKTGCETAE
601: QESSFMEVDP IPIPGPPGSF LPSPWDMMGT DAVEHHGNSS VITSQVHSSQ DQFDLTDRNS SESPVSAISN FAAPETQTLS LHNIITTDKR PSRFRDNDQS
701: CCCQRKEKAL EDTTFCQPPP PQMIQQDLDF LSKSVPAVPS TPNPVLRLMG KDLMVINQRE EPSHNESSPK PTSQFLDLSK TQQASPSVNL LHPPYSGNGY
801: FDTNTSFYNI P
Arabidopsis Description
HAP8Hapless 8 [Source:UniProtKB/TrEMBL;Acc:Q9FH14]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.