Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0206900-01 | |
| Os12t0580700-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G56250.1 | Os03t0206900-01 | AT1G49850.1 | 21798944 |
| AT5G56250.1 | Os12t0580700-01 | AT1G49850.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU81762 | Sorghum | nucleus | 64.16 | 64.32 |
| Zm00001d003333_P005 | Maize | nucleus | 62.87 | 62.87 |
| Zm00001d025668_P005 | Maize | nucleus | 62.07 | 62.07 |
| TraesCS2D01G332100.1 | Wheat | nucleus | 57.38 | 57.57 |
| TraesCS2A01G330900.1 | Wheat | nucleus | 57.38 | 57.52 |
| TraesCS2B01G351400.1 | Wheat | nucleus | 56.42 | 56.69 |
| GSMUA_Achr4P01620_001 | Banana | nucleus | 31.32 | 30.62 |
| GSMUA_Achr5P04160_001 | Banana | nucleus | 22.52 | 30.0 |
| GSMUA_Achr10P... | Banana | nucleus | 26.39 | 29.81 |
| GSMUA_Achr9P12690_001 | Banana | nucleus | 29.7 | 29.11 |
| GSMUA_Achr3P10940_001 | Banana | nucleus | 27.44 | 25.99 |
| GSMUA_Achr10P... | Banana | nucleus | 23.57 | 25.86 |
| AT5G56250.1 | Thale cress | nucleus | 16.87 | 25.77 |
| CDY36785 | Canola | nucleus | 12.03 | 25.69 |
| Bra035611.1-P | Field mustard | nucleus, plastid | 15.09 | 25.65 |
| CDY20740 | Canola | plastid | 15.09 | 25.3 |
| CDY06514 | Canola | nucleus, plastid | 13.8 | 24.82 |
| GSMUA_Achr7P20270_001 | Banana | nucleus | 26.23 | 24.7 |
| CDY11950 | Canola | nucleus | 14.69 | 23.95 |
| Bra028941.1-P | Field mustard | nucleus, plastid | 14.53 | 23.9 |
| CDY36786 | Canola | nucleus, plastid | 14.53 | 23.9 |
| CDY06515 | Canola | nucleus, plastid | 16.95 | 23.23 |
| CDY62101 | Canola | nucleus | 12.75 | 23.1 |
| CDY11951 | Canola | nucleus, plastid | 15.82 | 21.97 |
| Bra035610.1-P | Field mustard | nucleus, plastid | 16.95 | 21.92 |
| CDY17406 | Canola | nucleus, plastid | 16.46 | 21.86 |
| CDY32803 | Canola | nucleus | 16.63 | 21.68 |
| CDY65749 | Canola | nucleus | 15.33 | 21.54 |
| Bra002832.1-P | Field mustard | nucleus | 16.79 | 21.47 |
| Bra028942.1-P | Field mustard | nucleus | 16.55 | 21.38 |
| AT5G56240.3 | Thale cress | nucleus | 16.71 | 20.97 |
| CDY36783 | Canola | cytosol | 1.94 | 20.17 |
| Bra002831.1-P | Field mustard | nucleus | 9.77 | 20.17 |
| CDY32802 | Canola | nucleus | 9.77 | 20.17 |
| VIT_19s0015g01810.t01 | Wine grape | nucleus | 22.52 | 20.06 |
| Solyc07g066200.2.1 | Tomato | nucleus | 21.39 | 19.78 |
| PGSC0003DMT400056953 | Potato | nucleus | 22.03 | 19.57 |
Protein Annotations
| EnsemblPlants:Os04t0471400-01 | EnsemblPlantsGene:Os04g0471400 | EntrezGene:4336125 | PANTHER:PTHR35767 | PANTHER:PTHR35767:SF1 | ProteinID:BAF14970.1 |
| ProteinID:BAS89648.1 | ProteinID:CAE03057.2 | ProteinID:EEE61170.1 | RefSeq:XP_015635948.1 | RefSeq:XP_015635949.1 | RefSeq:XP_015635950.1 |
| RefSeq:XP_015635953.1 | RefSeq:XP_015635954.1 | SEG:seg | UniParc:UPI000021C624 | UniProt:Q7XQM5 | MapMan:35.2 |
Description
Similar to H0418A01.7 protein. (Os04t0471400-01);Similar to H0418A01.7 protein. (Os04t0471400-02);Similar to H0418A01.7 protein. (Os04t0471400-03)
Coordinates
chr4:-:23553880..23560611
Molecular Weight (calculated)
135407.0 Da
IEP (calculated)
6.868
GRAVY (calculated)
-0.751
Length
1239 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLSSEEPSGP SCSSIQGVSA VPATSPGESP ASQDPTDLVQ PCAKFSIRDY VFASRSKGIK RSWPFHPRSL QLCLKRGVKD LLPPFEPPDL IRSRSLSTTI
0101: NVEQSAASSE ANAPVGLVKT RDDGSSIVNA SNINFQSCQP VAESLGPSQY TSPEDGKSAV DQGENTNGLD HTDEVMPVDL QVNSCTKAIR QTEVAVPSWR
0201: SKNLDSSREP SEKKCKLVVK VGSLTRTEEV ASNSSTVSDP MASKTCPVCK VFASTSNTTL NAHMDQCLSV ESNTEPVEKV ILKPKVKPRK KRLMVDIYKT
0301: ARLFTLEDLD QRNGTNWAIE LATPTTNKEV CTENRSPEVV PFDPRDDERE GDVYVDSNGI KIRILSKSSD ASLVLRDEHN SRKVAKNETG KSMLMSKTCL
0401: KSKICKNKRL KFPGKKHSKT NRLNTQVRTH TDGDMHEHTS EDEEESTMHV QKPTESTSYG GSETIRQWVG SKRSGLSKNC AREVTDKASK SITPGTKKLA
0501: RSSIRGFDDS QISDSPPEAF SSQPPEEMTI TSEANDDDER NGTSRLLRSI PRWSLKTTPS SNVIPKVPRS AAALAKRKIK EIGRRESYRS DNYDTVRNST
0601: SIRNSVRRGP SSSVAGLSDG SNRVASTKKF RKNRSLLRTG RREFSPSNSG LVHGFGQDHG SNPNHTNKRF RVSNKETSKK LKHTQEDTAD NDFSYESDVP
0701: ALGQGDDQYD AAQQAGISQM YYEGEEPETE MQCASPSRSD PVDCSNDMSS DSLSPENNET ADDVLVEGYS VAIVDPCSNE KSAYHAHIPN DVANNEVEEW
0801: QIDPSSTKES SACLTNNRDM GLGAPQDNSS ITSNREDSNL DHGLVFDRGS SGSPVSTAST LSPSTSLRDS RTNRSEPGPS TVSLPTVEER VSGSSNQETK
0901: STPLAREGEQ LPEKSCCCNC RESISRDSQV HDQSAMARPV PAFTGRPVPQ LNIGLRASSS FSTYQRTSTK ANPCLDSHDQ TLAGKVSAEP TMTHPSYTTD
1001: CMSPSIQTQL PSPSNPILRL MGKNLMVMNS EESGHPQAPS SDYIMRGNYM APGCFMPQNY QHIGDPAFMN TTPSTANHQI PLSSVQAGNF SAPTLHNGSM
1101: VQSDYHSPQK PYRNLLPVMH HPSYMMKEVI MIDDSPEHRS DPQISMLLPS APSPATISVP NTVASRPFYC LPSQNQLLPR ESAVGPLPVF TNINPIVGVS
1201: SSSQGNNAEV AHPYMSNPFY VQSPAGYINP SVYYSQNLR
0101: NVEQSAASSE ANAPVGLVKT RDDGSSIVNA SNINFQSCQP VAESLGPSQY TSPEDGKSAV DQGENTNGLD HTDEVMPVDL QVNSCTKAIR QTEVAVPSWR
0201: SKNLDSSREP SEKKCKLVVK VGSLTRTEEV ASNSSTVSDP MASKTCPVCK VFASTSNTTL NAHMDQCLSV ESNTEPVEKV ILKPKVKPRK KRLMVDIYKT
0301: ARLFTLEDLD QRNGTNWAIE LATPTTNKEV CTENRSPEVV PFDPRDDERE GDVYVDSNGI KIRILSKSSD ASLVLRDEHN SRKVAKNETG KSMLMSKTCL
0401: KSKICKNKRL KFPGKKHSKT NRLNTQVRTH TDGDMHEHTS EDEEESTMHV QKPTESTSYG GSETIRQWVG SKRSGLSKNC AREVTDKASK SITPGTKKLA
0501: RSSIRGFDDS QISDSPPEAF SSQPPEEMTI TSEANDDDER NGTSRLLRSI PRWSLKTTPS SNVIPKVPRS AAALAKRKIK EIGRRESYRS DNYDTVRNST
0601: SIRNSVRRGP SSSVAGLSDG SNRVASTKKF RKNRSLLRTG RREFSPSNSG LVHGFGQDHG SNPNHTNKRF RVSNKETSKK LKHTQEDTAD NDFSYESDVP
0701: ALGQGDDQYD AAQQAGISQM YYEGEEPETE MQCASPSRSD PVDCSNDMSS DSLSPENNET ADDVLVEGYS VAIVDPCSNE KSAYHAHIPN DVANNEVEEW
0801: QIDPSSTKES SACLTNNRDM GLGAPQDNSS ITSNREDSNL DHGLVFDRGS SGSPVSTAST LSPSTSLRDS RTNRSEPGPS TVSLPTVEER VSGSSNQETK
0901: STPLAREGEQ LPEKSCCCNC RESISRDSQV HDQSAMARPV PAFTGRPVPQ LNIGLRASSS FSTYQRTSTK ANPCLDSHDQ TLAGKVSAEP TMTHPSYTTD
1001: CMSPSIQTQL PSPSNPILRL MGKNLMVMNS EESGHPQAPS SDYIMRGNYM APGCFMPQNY QHIGDPAFMN TTPSTANHQI PLSSVQAGNF SAPTLHNGSM
1101: VQSDYHSPQK PYRNLLPVMH HPSYMMKEVI MIDDSPEHRS DPQISMLLPS APSPATISVP NTVASRPFYC LPSQNQLLPR ESAVGPLPVF TNINPIVGVS
1201: SSSQGNNAEV AHPYMSNPFY VQSPAGYINP SVYYSQNLR
001: MFLSTENPPN DPLSSSSSPF LQHLTSSSHE LGQSHLSNFS IRDYAYSNRK NNIKNNWPFS SKSLQLFSTH GVTNPLPPFQ KFSTVSSKFE TTASPSSGKQ
101: IVSSYVHQGR DLDLAKLGLN QTVAETSSKG VCSQSRIIEN GLFPSTSVSK SEVEILVATT SNKKDNHSRK CGRGMVKSKE DSCAGLVTTS ESIMASKTCP
201: ICKTFSSASN TTLNAHIDQC LSVDSALLPP VVFSKPNKPR SKPPRVKVKT MVDIYASAKQ GTLEDLDRRN GTKWVSILSY SNRVVADKSE VSKKRKVSPV
301: GVGPVYIDAK GQKLRILSGF SEKKSSTTPL REQHEDGSSD KKCLGQGSKG TNKSLRKIRR GKKPHKFVKL TNHKADGPEQ IRGVQRGFSG EGSHMGHHRR
401: IYNQRMLAKR GLVSKKLNEK GHELSEDDED TWSGGDPTVL RGTDLSATDS YPLKKQKLGS EVAGRKKTLF RSQSAQSRSF RVPQSEKEDE SLEGVNINRL
501: KKSVASFQED KYPPGKKFCS DASPRGTSMR KFSPPFVPNA WRRLSMPVEL KKARLDFSEE KDDEETGKWE SEMTHERELR DDDYVSGDDG ENNEVLLRSN
601: PSSSGYDDYN DDDEESSEEE GDNNKRAHVL DQTDYTGAEF YQSESDSPTS IEILPSERAM YYSEAGNMIY GQTSCKEDER FDSEVGQGSL FVEVDTIPIP
701: GPPGSFLPSP RDMGFDENLG NSSVITSQVQ SSMDQLDRNS SESPVSAVSN FAAGRLNFPA ELSSFRENFS PDIAMSYSTT PMSFCVPSHH GTITEAEPIT
801: IDKTISPSRF RNNDQESCCC QRKERISEGI TLNHQGSHLL QRRAASSSNT MNLTNSPTRL DPNHPFEQSP YKTQQALDLQ MSKFSSRKSL NAVVPPSPSN
901: PVLRLMGKDL MVMNQGEADE EASRSSLTPN PQFVDPPCGG TGLYFNTGLY LRNSFDSTHQ PQVQAQQQSQ AAAFRNNFDH VRYFSPS
101: IVSSYVHQGR DLDLAKLGLN QTVAETSSKG VCSQSRIIEN GLFPSTSVSK SEVEILVATT SNKKDNHSRK CGRGMVKSKE DSCAGLVTTS ESIMASKTCP
201: ICKTFSSASN TTLNAHIDQC LSVDSALLPP VVFSKPNKPR SKPPRVKVKT MVDIYASAKQ GTLEDLDRRN GTKWVSILSY SNRVVADKSE VSKKRKVSPV
301: GVGPVYIDAK GQKLRILSGF SEKKSSTTPL REQHEDGSSD KKCLGQGSKG TNKSLRKIRR GKKPHKFVKL TNHKADGPEQ IRGVQRGFSG EGSHMGHHRR
401: IYNQRMLAKR GLVSKKLNEK GHELSEDDED TWSGGDPTVL RGTDLSATDS YPLKKQKLGS EVAGRKKTLF RSQSAQSRSF RVPQSEKEDE SLEGVNINRL
501: KKSVASFQED KYPPGKKFCS DASPRGTSMR KFSPPFVPNA WRRLSMPVEL KKARLDFSEE KDDEETGKWE SEMTHERELR DDDYVSGDDG ENNEVLLRSN
601: PSSSGYDDYN DDDEESSEEE GDNNKRAHVL DQTDYTGAEF YQSESDSPTS IEILPSERAM YYSEAGNMIY GQTSCKEDER FDSEVGQGSL FVEVDTIPIP
701: GPPGSFLPSP RDMGFDENLG NSSVITSQVQ SSMDQLDRNS SESPVSAVSN FAAGRLNFPA ELSSFRENFS PDIAMSYSTT PMSFCVPSHH GTITEAEPIT
801: IDKTISPSRF RNNDQESCCC QRKERISEGI TLNHQGSHLL QRRAASSSNT MNLTNSPTRL DPNHPFEQSP YKTQQALDLQ MSKFSSRKSL NAVVPPSPSN
901: PVLRLMGKDL MVMNQGEADE EASRSSLTPN PQFVDPPCGG TGLYFNTGLY LRNSFDSTHQ PQVQAQQQSQ AAAFRNNFDH VRYFSPS
Arabidopsis Description
BEST Arabidopsis thaliana protein match is: hapless 8 (TAIR:AT5G56250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: /.../BLink). [Source:TAIR;Acc:AT5G56240]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.