Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G330900.1 | Wheat | nucleus | 97.17 | 97.09 |
| TraesCS2B01G351400.1 | Wheat | nucleus | 95.38 | 95.54 |
| Os04t0471400-01 | Rice | nucleus | 57.57 | 57.38 |
| OQU81762 | Sorghum | nucleus | 55.87 | 55.83 |
| Zm00001d025668_P005 | Maize | nucleus | 54.01 | 53.83 |
| Zm00001d003333_P005 | Maize | nucleus | 53.85 | 53.67 |
| GSMUA_Achr9P12690_001 | Banana | nucleus | 28.58 | 27.93 |
| GSMUA_Achr10P... | Banana | nucleus | 24.37 | 27.44 |
| GSMUA_Achr4P01620_001 | Banana | nucleus | 27.85 | 27.15 |
| GSMUA_Achr5P04160_001 | Banana | nucleus | 20.32 | 26.99 |
| AT5G56250.1 | Thale cress | nucleus | 16.11 | 24.54 |
| CDY06514 | Canola | nucleus, plastid | 13.68 | 24.53 |
| CDY36785 | Canola | nucleus | 11.42 | 24.31 |
| Bra035611.1-P | Field mustard | nucleus, plastid | 14.33 | 24.28 |
| CDY20740 | Canola | plastid | 14.33 | 23.95 |
| GSMUA_Achr10P... | Banana | nucleus | 21.78 | 23.83 |
| GSMUA_Achr3P10940_001 | Banana | nucleus | 25.02 | 23.62 |
| Bra028941.1-P | Field mustard | nucleus, plastid | 14.09 | 23.11 |
| CDY36786 | Canola | nucleus, plastid | 14.09 | 23.11 |
| GSMUA_Achr7P20270_001 | Banana | nucleus | 24.21 | 22.72 |
| CDY11950 | Canola | nucleus | 13.93 | 22.63 |
| CDY06515 | Canola | nucleus, plastid | 16.52 | 22.57 |
| CDY62101 | Canola | nucleus | 12.15 | 21.93 |
| Bra035610.1-P | Field mustard | nucleus, plastid | 16.44 | 21.19 |
| CDY11951 | Canola | nucleus, plastid | 15.22 | 21.08 |
| CDY65749 | Canola | nucleus | 14.57 | 20.41 |
| CDY32803 | Canola | nucleus | 15.63 | 20.32 |
| Bra028942.1-P | Field mustard | nucleus | 15.63 | 20.13 |
| CDY17406 | Canola | nucleus, plastid | 14.98 | 19.83 |
| Bra002832.1-P | Field mustard | nucleus | 15.55 | 19.81 |
| AT5G56240.3 | Thale cress | nucleus | 15.79 | 19.76 |
| CDY32802 | Canola | nucleus | 9.47 | 19.5 |
| Bra002831.1-P | Field mustard | nucleus | 9.47 | 19.5 |
| VIT_19s0015g01810.t01 | Wine grape | nucleus | 21.05 | 18.69 |
| CDY36783 | Canola | cytosol | 1.7 | 17.65 |
| Solyc07g066200.2.1 | Tomato | nucleus | 18.79 | 17.31 |
| PGSC0003DMT400056953 | Potato | nucleus | 19.35 | 17.13 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G332100.1 | EnsemblPlantsGene:TraesCS2D01G332100 | ncoils:Coil | PANTHER:PTHR35767 | PANTHER:PTHR35767:SF1 | SEG:seg |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2D:-:424852830..424860482
Molecular Weight (calculated)
135903.0 Da
IEP (calculated)
8.236
GRAVY (calculated)
-0.749
Length
1235 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLSSDHPSGP SCSSQSVVRV VGADPATFHA ADSPESAHQD PADLVQPCPT FSIRDYVFDS RSKGIKRSWP FHPQSLELCL KRGVKDLLPP FEPPDLLRSR
0101: SFYTCVDSEQ SAACLEADAF VDLVKAREAG LTNVNTTGIN LQSCQSADES LGPSQYTPTE GGKTATDQGG NINELGHTSK AIQAYQEDNI CTKASSGTEV
0201: ARPYLKSLGS SRETSEKKGK LLVKSGSMTD IRQRKDLSYN SSSVSNPKAS NTCPVCKVFS SPSNTTLNAH IDQCLYAVSN AEPVVETVIV KPKVKQRKMQ
0301: LMVDIYKTAL PYTLDDLDRR NGTNWAIDLS VPAVNKVLCT KNRSPRVVPS EAKDSERDSD VYVDSNGIKI RILSKPIGAP LVLGNDGLKQ VEKHQTGKST
0401: LMKKTSLESK SFRNKKFKVH GKKCNRLNHL KSQVELYPDG DIHADTSEEE LAMHTQKPTE SSSCGRSGTI RQWVCSKRSG ITNNLSRKSN NILSDSMKPG
0501: TKKLARSRMI GGFDDPQITG SYTEAFSSRS TEETATTLEV NENDDHEKGS SRLFRSIPRW SSENPSSSSA FPKVPRSAAT LAKRKIKEIG RREASRSDKY
0601: DTVRNSTSTK CSEPCLSVSI RGLSNDSKRT VSTSKVLRKH RSVSRTRKRD FSPSISGLVN DFGQEHELDH RHVNNTFSVT NNGTSDKVVK HTQEDTTDND
0701: ISYGTDMPAL GQGDHQHDVT QQTTSTHMDS EGEEHATQMQ CTSVSRNTHE DCCSAISSGS LSLENSKTVP KGSSSMQDQC STKQSTHHTH VSNIVTNNEM
0801: EECQVDPAST KESSTCLTNN REMGLATPRD NSSITSNRED SNQDHVFLAF GRDSSDSPIS VASTMSSPVA LNGSRNEESG PGQSTVNVRT LEKSMSGSSN
0901: QETKSMPPAR EGDQLAKEKL YCCSCRESIS REPHLDHESS TARSDTFARK QVPQLHMGLR TSSSFSTYQR TDTNSNPYLD SHGQLLTGKV ITESSMSSLS
1001: YATDCIRPAL QTQLPSPPSP MLRLMGKNLM VMNSQESGRP QAPKPDYMLG GNYMPPASFV PPDYQHSHSA LIDRTPSARS HQIPLPSVQA SNFVGPPMHG
1101: GFMVQSNHHS LQKPYRNPAP VMHHPTYMMK EVIMINDDPP ECRSEPQVSM HPPTGTYPTS ISVPNNFGPR PFYCHPPPMQ ILPRENFAGS MPVFPMFGAQ
1201: RQQVRYSQSL HLTPSRVQPP QGYINPHVYY PQDLR
0101: SFYTCVDSEQ SAACLEADAF VDLVKAREAG LTNVNTTGIN LQSCQSADES LGPSQYTPTE GGKTATDQGG NINELGHTSK AIQAYQEDNI CTKASSGTEV
0201: ARPYLKSLGS SRETSEKKGK LLVKSGSMTD IRQRKDLSYN SSSVSNPKAS NTCPVCKVFS SPSNTTLNAH IDQCLYAVSN AEPVVETVIV KPKVKQRKMQ
0301: LMVDIYKTAL PYTLDDLDRR NGTNWAIDLS VPAVNKVLCT KNRSPRVVPS EAKDSERDSD VYVDSNGIKI RILSKPIGAP LVLGNDGLKQ VEKHQTGKST
0401: LMKKTSLESK SFRNKKFKVH GKKCNRLNHL KSQVELYPDG DIHADTSEEE LAMHTQKPTE SSSCGRSGTI RQWVCSKRSG ITNNLSRKSN NILSDSMKPG
0501: TKKLARSRMI GGFDDPQITG SYTEAFSSRS TEETATTLEV NENDDHEKGS SRLFRSIPRW SSENPSSSSA FPKVPRSAAT LAKRKIKEIG RREASRSDKY
0601: DTVRNSTSTK CSEPCLSVSI RGLSNDSKRT VSTSKVLRKH RSVSRTRKRD FSPSISGLVN DFGQEHELDH RHVNNTFSVT NNGTSDKVVK HTQEDTTDND
0701: ISYGTDMPAL GQGDHQHDVT QQTTSTHMDS EGEEHATQMQ CTSVSRNTHE DCCSAISSGS LSLENSKTVP KGSSSMQDQC STKQSTHHTH VSNIVTNNEM
0801: EECQVDPAST KESSTCLTNN REMGLATPRD NSSITSNRED SNQDHVFLAF GRDSSDSPIS VASTMSSPVA LNGSRNEESG PGQSTVNVRT LEKSMSGSSN
0901: QETKSMPPAR EGDQLAKEKL YCCSCRESIS REPHLDHESS TARSDTFARK QVPQLHMGLR TSSSFSTYQR TDTNSNPYLD SHGQLLTGKV ITESSMSSLS
1001: YATDCIRPAL QTQLPSPPSP MLRLMGKNLM VMNSQESGRP QAPKPDYMLG GNYMPPASFV PPDYQHSHSA LIDRTPSARS HQIPLPSVQA SNFVGPPMHG
1101: GFMVQSNHHS LQKPYRNPAP VMHHPTYMMK EVIMINDDPP ECRSEPQVSM HPPTGTYPTS ISVPNNFGPR PFYCHPPPMQ ILPRENFAGS MPVFPMFGAQ
1201: RQQVRYSQSL HLTPSRVQPP QGYINPHVYY PQDLR
001: MFLSSTDQRS PSNNNPSSSS SFLHLTNSCD ELGQSHLSTF SIRDYAFSYR TKNIKKSWPF SSTSLQLCLN HGLTDPLPPI QPPEVKKPNI THVEAVSHKR
101: KSEKLGSYQI LVETTKQGFE NGLLASGSKS KIQVAMVNKN PRKKCGLIVK PGACVDSGGK EDHSSLFSAS DSMALRTCPI CKTFSSASNT TLNAHIDQCL
201: SVDSGQQPIR KPNRPKTKPR LKVKTMTDIY ASAKEGTLED LDKRNGTKWA MISSYSNRVV SDDKPEVSNK VKKRSVSRAR IDEDAAGIGP VYIDAKGQKL
301: RILSKFNEKA SDPSRREHEE VCEKKSSSEG KGGKSFRKKL WGEKHYKHRK LVPQNRKLTV RKSNASEIPE YRRGYSKEGK DFERSETSGP GQGRIFNQRM
401: LTKRSLSRHG KKNGTDICES ENWNSLSEDP LVLRSPSHVS TDLSETVSSP LNSIGSWRVC GESQVSGKSW ALSRNRSIES DLFVANPLRC LTPVARGVMK
501: FKKARMDFSE NEDEDIGKWE SEMTQERELS DYDGWDDDDG ETDKVALSSN PSFSGEDNDY ESYEETGDNK GGDDMLDKTK DADVEFESMV YEKTGCETAE
601: QESSFMEVDP IPIPGPPGSF LPSPWDMMGT DAVEHHGNSS VITSQVHSSQ DQFDLTDRNS SESPVSAISN FAAPETQTLS LHNIITTDKR PSRFRDNDQS
701: CCCQRKEKAL EDTTFCQPPP PQMIQQDLDF LSKSVPAVPS TPNPVLRLMG KDLMVINQRE EPSHNESSPK PTSQFLDLSK TQQASPSVNL LHPPYSGNGY
801: FDTNTSFYNI P
101: KSEKLGSYQI LVETTKQGFE NGLLASGSKS KIQVAMVNKN PRKKCGLIVK PGACVDSGGK EDHSSLFSAS DSMALRTCPI CKTFSSASNT TLNAHIDQCL
201: SVDSGQQPIR KPNRPKTKPR LKVKTMTDIY ASAKEGTLED LDKRNGTKWA MISSYSNRVV SDDKPEVSNK VKKRSVSRAR IDEDAAGIGP VYIDAKGQKL
301: RILSKFNEKA SDPSRREHEE VCEKKSSSEG KGGKSFRKKL WGEKHYKHRK LVPQNRKLTV RKSNASEIPE YRRGYSKEGK DFERSETSGP GQGRIFNQRM
401: LTKRSLSRHG KKNGTDICES ENWNSLSEDP LVLRSPSHVS TDLSETVSSP LNSIGSWRVC GESQVSGKSW ALSRNRSIES DLFVANPLRC LTPVARGVMK
501: FKKARMDFSE NEDEDIGKWE SEMTQERELS DYDGWDDDDG ETDKVALSSN PSFSGEDNDY ESYEETGDNK GGDDMLDKTK DADVEFESMV YEKTGCETAE
601: QESSFMEVDP IPIPGPPGSF LPSPWDMMGT DAVEHHGNSS VITSQVHSSQ DQFDLTDRNS SESPVSAISN FAAPETQTLS LHNIITTDKR PSRFRDNDQS
701: CCCQRKEKAL EDTTFCQPPP PQMIQQDLDF LSKSVPAVPS TPNPVLRLMG KDLMVINQRE EPSHNESSPK PTSQFLDLSK TQQASPSVNL LHPPYSGNGY
801: FDTNTSFYNI P
Arabidopsis Description
HAP8Hapless 8 [Source:UniProtKB/TrEMBL;Acc:Q9FH14]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.