Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G049500.1 | Wheat | nucleus | 97.46 | 97.82 |
| TraesCS4D01G255100.1 | Wheat | nucleus | 96.38 | 96.38 |
| HORVU4Hr1G069450.3 | Barley | nucleus | 84.78 | 90.7 |
| EER95307 | Sorghum | nucleus | 81.16 | 81.75 |
| Os03t0206900-01 | Rice | nucleus | 80.07 | 81.25 |
| Zm00001d028055_P001 | Maize | nucleus | 78.26 | 79.41 |
| Zm00001d048134_P001 | Maize | nucleus | 77.9 | 79.04 |
| Bra014221.1-P | Field mustard | nucleus | 29.35 | 36.65 |
| CDY32837 | Canola | nucleus | 28.99 | 35.71 |
| CDY16531 | Canola | nucleus | 28.26 | 34.82 |
| Solyc01g107290.2.1 | Tomato | nucleus | 34.06 | 34.06 |
| CDY61552 | Canola | nucleus | 29.35 | 33.89 |
| KRG91075 | Soybean | nucleus | 28.62 | 33.47 |
| CDY20854 | Canola | nucleus | 29.35 | 33.47 |
| KRH35698 | Soybean | nucleus | 29.71 | 33.33 |
| Bra039652.1-P | Field mustard | nucleus | 29.35 | 33.33 |
| GSMUA_Achr6P24690_001 | Banana | nucleus | 32.25 | 33.09 |
| PGSC0003DMT400066172 | Potato | nucleus | 33.7 | 32.29 |
| AT1G49850.1 | Thale cress | nucleus | 28.62 | 31.6 |
| VIT_03s0091g00480.t01 | Wine grape | nucleus | 30.07 | 29.86 |
| TraesCS4B01G077700.1 | Wheat | cytosol | 23.91 | 25.19 |
| TraesCS5B01G078400.1 | Wheat | nucleus | 25.0 | 25.18 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G255400.1 | EnsemblPlantsGene:TraesCS4B01G255400 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF293 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | TIGR:cd16454 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr4B:-:520240066..520242140
Molecular Weight (calculated)
30973.2 Da
IEP (calculated)
9.169
GRAVY (calculated)
-0.786
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSASELFTA RRARAPRLSD PGDPGPDPLA DAPQDPHGLA ARRRRRGCRA RRQLDAAGDV RQHLHTGPPP PRRRGSYTDR ILSYIDNSNI GDSAATRNRL
101: DRLMFRTNER LPGAVLQAQA RVLERLRGVS IGSSTSRPSI TLDEFSATDV FRIIDFGSRE TPYEANWPSS SSVQPSSVSD EENLENTSIS STTSNRSPGL
201: SKSAFLRLQI EIFEAKKDDN REASPECSIC LDGFYDGDEL IRLRCRHRFH STCLEPWVRK CADCPYCRTN IRSRPR
101: DRLMFRTNER LPGAVLQAQA RVLERLRGVS IGSSTSRPSI TLDEFSATDV FRIIDFGSRE TPYEANWPSS SSVQPSSVSD EENLENTSIS STTSNRSPGL
201: SKSAFLRLQI EIFEAKKDDN REASPECSIC LDGFYDGDEL IRLRCRHRFH STCLEPWVRK CADCPYCRTN IRSRPR
001: MTSASELFST RRSRPGRSDP ALESDTSSYR HHSHHHHRRH GVHHHNQRHD SDGCDPLRRP TPRLRRFFHH PIQERSRPIR DVQGTSQYLN TDSTDTETQS
101: SSFVNLNGSE RLPGAVLLAR DRLFERLRGV SLSSNSRSNR VSLDDQRESS FHSIDGDPIF QLAGLQVTYE CNKKPQGLTQ DAINCLHRQT FSSAEVKSEM
201: RDCSICLESF TKGDMLISLP CTHSFHSSCL NPWLRACGDC PCCRRAIAKE
101: SSFVNLNGSE RLPGAVLLAR DRLFERLRGV SLSSNSRSNR VSLDDQRESS FHSIDGDPIF QLAGLQVTYE CNKKPQGLTQ DAINCLHRQT FSSAEVKSEM
201: RDCSICLESF TKGDMLISLP CTHSFHSSCL NPWLRACGDC PCCRRAIAKE
Arabidopsis Description
RHY1AProbable E3 ubiquitin-protein ligase RHY1A [Source:UniProtKB/Swiss-Prot;Acc:Q852U6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.