Factsheet for VIT_03s0091g00480.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0194g00260.t01
VIT_03s0017g00210.t01
VIT_03s0038g00350.t01
VIT_05s0020g03600.t01
VIT_11s0016g01760.t01
VIT_13s0067g03530.t01
VIT_16s0098g00600.t01
VIT_16s0115g00130.t01
VIT_17s0000g01240.t01
VIT_17s0000g01560.t01
VIT_17s0000g07350.t01
VIT_18s0001g08380.t01
VIT_19s0027g01340.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G49850.1	VIT_05s0020g03600.t01	AT1G05410.1	21798944
AT1G49850.1	VIT_03s0017g00210.t01	AT3G08530.1	21798944
AT1G49850.1	VIT_16s0115g00130.t01	AT3G08530.1	21798944
AT1G49850.1	VIT_19s0027g01340.t01	AT3G08530.1	21798944
AT1G49850.1	VIT_17s0000g01240.t01	AT3G48680.1	21798944
AT1G49850.1	VIT_18s0001g08380.t01	AT4G08150.1	21798944
AT1G49850.1	VIT_13s0067g03530.t01	AT4G08790.1	21798944
AT1G49850.1	VIT_00s0194g00260.t01	AT4G17220.1	21798944
AT1G49850.1	VIT_17s0000g01560.t01	AT4G24840.1	21798944
AT1G49850.1	VIT_11s0016g01760.t01	AT4G29820.1	21798944
AT1G49850.1	VIT_03s0038g00350.t01	AT4G39050.1	21798944
AT1G49850.1	VIT_16s0098g00600.t01	AT5G24660.1	21798944
AT1G49850.1	VIT_17s0000g07350.t01	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g107290.2.1	Tomato	nucleus	43.17	43.48
CDY16531	Canola	nucleus	34.53	42.86
CDY32837	Canola	nucleus	34.53	42.86
Bra014221.1-P	Field mustard	nucleus	33.09	41.63
CDY61552	Canola	nucleus	35.61	41.42
KRG91075	Soybean	nucleus	34.89	41.1
CDY20854	Canola	nucleus	35.25	40.5
AT1G49850.1	Thale cress	nucleus	35.97	40.0
Bra039652.1-P	Field mustard	nucleus	34.89	39.92
PGSC0003DMT400066172	Potato	nucleus	40.65	39.24
KRH35698	Soybean	nucleus	34.53	39.02
HORVU4Hr1G069450.3	Barley	nucleus	30.22	32.56
Os03t0206900-01	Rice	nucleus	31.65	32.35
Zm00001d028055_P001	Maize	nucleus	31.3	31.99
Zm00001d048134_P001	Maize	nucleus	30.94	31.62
EER95307	Sorghum	nucleus	30.94	31.39
TraesCS4D01G255100.1	Wheat	nucleus	30.58	30.8
TraesCS4A01G049500.1	Wheat	nucleus	29.86	30.18
TraesCS4B01G255400.1	Wheat	nucleus	29.86	30.07
GSMUA_Achr6P24690_001	Banana	nucleus	28.78	29.74
Zm00001d030843_P001	Maize	nucleus	25.18	28.57
KXG23810	Sorghum	cytosol	24.46	26.05
HORVU5Hr1G019040.1	Barley	cytosol	24.82	25.37
TraesCS5A01G072600.1	Wheat	nucleus	22.66	24.9
TraesCS4B01G077700.1	Wheat	cytosol	23.38	24.81
TraesCS5B01G078400.1	Wheat	nucleus	24.1	24.45
Os12t0580700-01	Rice	nucleus	22.66	24.42
TraesCS5D01G085300.1	Wheat	nucleus	24.1	24.36
TraesCS4A01G237400.1	Wheat	mitochondrion, nucleus	21.22	22.35
GSMUA_Achr4P32570_001	Banana	nucleus	20.5	21.43
TraesCS4D01G076100.1	Wheat	golgi, mitochondrion	19.78	20.91
HORVU4Hr1G013180.1	Barley	nucleus	21.58	17.49

Protein Annotations

EntrezGene:100249808	wikigene:100249808	Gene3D:3.30.40.10	MapMan:35.1	ProteinID:CBI22487	ProteinID:CBI22487.3
UniProt:D7SXT7	EMBL:FN595242	GO:GO:0003674	GO:GO:0003824	GO:GO:0004721	GO:GO:0004722
GO:GO:0005488	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0016787	GO:GO:0019538	GO:GO:0043161
GO:GO:0043169	GO:GO:0046872	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	EntrezGene:LOC100249808
wikigene:LOC100249808	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR14155	PANTHER:PTHR14155:SF293	SMART:SM00184
SUPFAM:SSF57850	TIGR:TC67660	UniParc:UPI00015CCFEB	ArrayExpress:VIT_03s0091g00480	EnsemblPlantsGene:VIT_03s0091g00480	EnsemblPlants:VIT_03s0091g00480.t01
unigene:Vvi.1378	RefSeq:XP_002262757	RefSeq:XP_002262757.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

No Description!

Coordinates

chr3:-:6851584..6855075

Molecular Weight (calculated)

31251.8 Da

IEP (calculated)

8.350

GRAVY (calculated)

-0.675

Length

278 amino acids

Sequence
(BLAST)

001: MTSASELFSR RSRLGRAAPP ADFEGLELPD DRSFHYISNR RRHHHRHDPD GCDPLRRAQH FRHISHRVYR PDREPVRLDQ ATRQPSSSGI NSVSADILSG
101: ISHRQRFTGS DRLPGAVLLA RERLLARLRG VPLSGNRRIS RPSLDFHLDD FTFGDDFRLI DVGDWSTGWL TGGTPSSDLN SETMLPPLMR EPSKKKPPGL
201: TQEALDSLHR AVFSRAEGAE EGMPRASRDC SICLDGYREG DKLTCLPCGH KFHSACLDPW VRTCGDCPYC RSVIDISS

Best Arabidopsis Sequence Match ( AT1G49850.1 )
(BLAST)

001: MTSASELFST RRSRPGRSDP ALESDTSSYR HHSHHHHRRH GVHHHNQRHD SDGCDPLRRP TPRLRRFFHH PIQERSRPIR DVQGTSQYLN TDSTDTETQS
101: SSFVNLNGSE RLPGAVLLAR DRLFERLRGV SLSSNSRSNR VSLDDQRESS FHSIDGDPIF QLAGLQVTYE CNKKPQGLTQ DAINCLHRQT FSSAEVKSEM
201: RDCSICLESF TKGDMLISLP CTHSFHSSCL NPWLRACGDC PCCRRAIAKE

Arabidopsis Description

RHY1AProbable E3 ubiquitin-protein ligase RHY1A [Source:UniProtKB/Swiss-Prot;Acc:Q852U6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.