Factsheet for VIT_11s0016g01760.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
peroxisome 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0023g03890.t01
VIT_04s0023g03910.t01
VIT_08s0007g06670.t01
VIT_11s0037g00130.t01
VIT_13s0156g00260.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G29820.1	VIT_08s0007g06670.t01	AT5G06710.1	21798944
AT4G29820.1	VIT_13s0156g00260.t01	AT5G06710.1	21798944
AT4G29820.1	VIT_11s0037g00130.t01	AT5G58040.1	16282318
AT4G29820.1	VIT_11s0037g00130.t01	AT5G58040.1	18479511
AT4G29820.1	VIT_04s0023g03890.t01	AT5G66110.1	21798944
AT4G29820.1	VIT_04s0023g03910.t01	AT5G66110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046377	Potato	cytosol	50.86	73.27
Solyc07g041000.2.1	Tomato	cytosol	48.8	70.3
GSMUA_Achr3P26260_001	Banana	cytosol	48.8	66.05
KRH37445	Soybean	nucleus	48.45	62.67
AT4G29820.1	Thale cress	cytosol	47.42	62.16
CDY43528	Canola	cytosol	45.7	61.29
Bra011138.1-P	Field mustard	cytosol	44.67	59.36
Bra009744.1-P	Field mustard	cytosol, mitochondrion, peroxisome	9.62	57.14
CDX88086	Canola	cytosol, mitochondrion, peroxisome	9.62	57.14
TraesCS7D01G325500.1	Wheat	cytosol	39.18	53.77
VIT_16s0050g00030.t01	Wine grape	cytosol, plastid	36.77	53.5
TraesCS7A01G328600.1	Wheat	cytosol, nucleus, peroxisome	38.83	53.3
Zm00001d050266_P001	Maize	cytosol	40.89	53.12
Os08t0398800-02	Rice	cytosol	39.86	51.33
CDX88087	Canola	cytosol, extracellular, mitochondrion, plastid	9.62	50.91
OQU80396	Sorghum	cytosol	41.58	50.84
CDX68589	Canola	plastid	47.08	48.24
VIT_15s0046g03350.t01	Wine grape	cytosol	37.46	46.38
TraesCS7B01G229300.1	Wheat	cytosol	38.49	45.71
KRH12461	Soybean	plastid	46.05	45.27
HORVU7Hr1G078670.4	Barley	plastid	39.52	44.57
CDX85073	Canola	cytosol, extracellular, nucleus	31.62	43.19

Protein Annotations

EntrezGene:100250770	wikigene:100250770	MapMan:16.2.1.4.1	Gene3D:3.90.79.10	ProteinID:CBI27869	ProteinID:CBI27869.3
InterPro:Cleav_polyA_spec_factor_su5	UniProt:D7TCL1	EMBL:FN595756	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005849	GO:GO:0006139	GO:GO:0006378	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	EntrezGene:LOC100250770	wikigene:LOC100250770	InterPro:NUDIX_hydrolase-like_dom_sf
PFAM:PF13869	PIRSF:PIRSF017888	PANTHER:PTHR13047	PANTHER:PTHR13047:SF1	SUPFAM:SSF55811	UniParc:UPI00015C8622
ArrayExpress:VIT_11s0016g01760	EnsemblPlantsGene:VIT_11s0016g01760	EnsemblPlants:VIT_11s0016g01760.t01	unigene:Vvi.18135	RefSeq:XP_002279095	RefSeq:XP_002279095.1
RefSeq:XP_002279095.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr11:+:1406408..1409163

Molecular Weight (calculated)

33151.4 Da

IEP (calculated)

9.598

GRAVY (calculated)

-0.180

Length

291 amino acids

Sequence
(BLAST)

001: MRDIWVNMSN PSPLLPVHLG HITHIPSWTA TSKVTQHSDI VLRHRPVCYF ASPQRFFLSR LFSAFPQALS LIFRMNYEMG SSADGDRSSS GDSSNHVLDI
101: YPLSCYYFGS KDPLLLKEET LADRILRMKS NYSRYGSRTC VVAVILVELF KHPHLLLLQV KNSFFKLPGG RLRPGESEIN GLKRKLSRKL SVNEDGDGSD
201: WEVGECLGMW WRPDFETLLY PYLPPNVKNP KECTKLFLVK LPPSRKFIVP KNLKLLAIPL CQLHENDKTY GPIIAGVPQL LSKFSFNIID S

Best Arabidopsis Sequence Match ( AT4G29820.1 )
(BLAST)

001: MGEEARALDM EEISDNTTRR NDVVHDLMVD LYPLSSYYFG SKEALRVKDE IISDRVIRLK SNYAAHGLRT CVEAVLLVEL FKHPHVLLLQ YRNSIFKLPG
101: GRLRPGESDI EGLKRKLASK LSVNENVGVS GYEVGECIGM WWRPNFETLM YPFLPPNIKH PKECTKLFLV RLPVHQQFVV PKNFKLLAVP LCQLHENEKT
201: YGPIMSQIPK LLSKFSFNMM EI

Arabidopsis Description

CFIS1Pre-mRNA cleavage factor Im 25 kDa subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94AF0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.