Factsheet for Bra009744.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, peroxisome, mitochondrion

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
plastid 1
peroxisome 1
nucleus 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, peroxisome
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002677.1-P
Bra005907.1-P
Bra006786.1-P
Bra009219.1-P
Bra009662.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G29820.1	Bra005907.1-P	AT5G06710.1	21798944
AT4G29820.1	Bra009219.1-P	AT5G06710.1	21798944
AT4G29820.1	Bra002677.1-P	AT5G58040.1	16282318
AT4G29820.1	Bra006786.1-P	AT5G58040.1	16282318
AT4G29820.1	Bra002677.1-P	AT5G58040.1	18479511
AT4G29820.1	Bra006786.1-P	AT5G58040.1	18479511
AT4G29820.1	Bra009662.1-P	AT5G66110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88086	Canola	cytosol, mitochondrion, peroxisome	100.0	100.0
Bra011138.1-P	Field mustard	cytosol	67.35	15.07
AT4G29820.1	Thale cress	cytosol	65.31	14.41
PGSC0003DMT400046377	Potato	cytosol	57.14	13.86
KRH37445	Soybean	nucleus	59.18	12.89
Solyc07g041000.2.1	Tomato	cytosol	53.06	12.87
Bra013899.1-P	Field mustard	cytosol	51.02	12.5
Bra019155.1-P	Field mustard	cytosol	51.02	12.5
GSMUA_Achr3P26260_001	Banana	cytosol	44.9	10.23
VIT_11s0016g01760.t01	Wine grape	plastid	57.14	9.62
KRH12461	Soybean	plastid	55.1	9.12
TraesCS7D01G325500.1	Wheat	cytosol	38.78	8.96
Os08t0398800-02	Rice	cytosol	40.82	8.85
TraesCS7A01G328600.1	Wheat	cytosol, nucleus, peroxisome	36.73	8.49
Zm00001d050266_P001	Maize	cytosol	36.73	8.04
OQU80396	Sorghum	cytosol	38.78	7.98
HORVU7Hr1G078670.4	Barley	plastid	38.78	7.36
TraesCS7B01G229300.1	Wheat	cytosol	36.73	7.35
Bra010457.1-P	Field mustard	cytosol	51.02	6.36
CDX88087	Canola	cytosol, extracellular, mitochondrion, plastid	0.0	0.0

Protein Annotations

MapMan:16.2.1.4.1	Gene3D:3.90.79.10	EnsemblPlantsGene:Bra009744	EnsemblPlants:Bra009744.1	EnsemblPlants:Bra009744.1-P	InterPro:Cleav_polyA_spec_factor_su5
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005849	GO:GO:0006139
GO:GO:0006378	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	UniProt:M4CZU7	PFAM:PF13869
PANTHER:PTHR13047	PANTHER:PTHR13047:SF1	UniParc:UPI000253F172	:	:	:

Description

AT4G29820 (E=2e-015) CFIM-25, ATCFIM-25 | CFIM-25

Coordinates

chrA06:-:16974114..16974365

Molecular Weight (calculated)

5650.0 Da

IEP (calculated)

9.467

GRAVY (calculated)

-0.276

Length

49 amino acids

Sequence
(BLAST)

1: MKVGECIGTW WRPNFKTLMY PFLPPNVKHP KECLKLSWET SAPSAVCRA

Best Arabidopsis Sequence Match ( AT4G29820.1 )
(BLAST)

001: MGEEARALDM EEISDNTTRR NDVVHDLMVD LYPLSSYYFG SKEALRVKDE IISDRVIRLK SNYAAHGLRT CVEAVLLVEL FKHPHVLLLQ YRNSIFKLPG
101: GRLRPGESDI EGLKRKLASK LSVNENVGVS GYEVGECIGM WWRPNFETLM YPFLPPNIKH PKECTKLFLV RLPVHQQFVV PKNFKLLAVP LCQLHENEKT
201: YGPIMSQIPK LLSKFSFNMM EI

Arabidopsis Description

CFIS1Pre-mRNA cleavage factor Im 25 kDa subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94AF0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.