CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95402
KRH12930
KRH13873
KRH28829
KRH37905
KRH38083
KRH43419
KRH67080
KRH71831

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G29820.1	KRG95402	AT5G06710.1	21798944
AT4G29820.1	KRH13873	AT5G06710.1	21798944
AT4G29820.1	KRH38083	AT5G06710.1	21798944
AT4G29820.1	KRH43419	AT5G06710.1	21798944
AT4G29820.1	KRH67080	AT5G06710.1	21798944
AT4G29820.1	KRH71831	AT5G06710.1	21798944
AT4G29820.1	KRH12930	AT5G58040.1	16282318
AT4G29820.1	KRH37905	AT5G58040.1	16282318
AT4G29820.1	KRH12930	AT5G58040.1	18479511
AT4G29820.1	KRH37905	AT5G58040.1	18479511
AT4G29820.1	KRH28829	AT5G66110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046377	Potato	cytosol	55.11	61.39
CDY43528	Canola	cytosol	59.11	61.29
AT4G29820.1	Thale cress	cytosol	59.56	60.36
Bra011138.1-P	Field mustard	cytosol	58.67	60.27
Solyc07g041000.2.1	Tomato	cytosol	53.33	59.41
Bra009744.1-P	Field mustard	cytosol, mitochondrion, peroxisome	12.89	59.18
CDX88086	Canola	cytosol, mitochondrion, peroxisome	12.89	59.18
CDX88087	Canola	cytosol, extracellular, mitochondrion, plastid	14.22	58.18
GSMUA_Achr3P26260_001	Banana	cytosol	52.89	55.35
KRH12461	Soybean	plastid	72.0	54.73
KRG91493	Soybean	endoplasmic reticulum, nucleus	44.0	49.5
VIT_11s0016g01760.t01	Wine grape	plastid	62.67	48.45
TraesCS7A01G328600.1	Wheat	cytosol, nucleus, peroxisome	44.89	47.64
TraesCS7D01G325500.1	Wheat	cytosol	44.89	47.64
OQU80396	Sorghum	cytosol	50.22	47.48
Zm00001d050266_P001	Maize	cytosol	47.11	47.32
CDX68589	Canola	plastid	59.11	46.83
Os08t0398800-02	Rice	cytosol	45.78	45.58
KRH35335	Soybean	cytosol	14.67	45.21
CDX85073	Canola	cytosol, extracellular, nucleus	40.89	43.19
TraesCS7B01G229300.1	Wheat	cytosol	44.89	41.22
HORVU7Hr1G078670.4	Barley	plastid	45.78	39.92

Protein Annotations

EntrezGene:100791216	MapMan:16.2.1.4.1	Gene3D:3.90.79.10	UniProt:A0A0R0IAV3	EMBL:ACUP02005446	InterPro:Cleav_polyA_spec_factor_su5
EnsemblPlantsGene:GLYMA_09G066700	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005849	GO:GO:0006139	GO:GO:0006378	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	EnsemblPlants:KRH37445	ProteinID:KRH37445	ProteinID:KRH37445.1	InterPro:NUDIX_hydrolase-like_dom_sf	PFAM:PF13869
PIRSF:PIRSF017888	PANTHER:PTHR13047	PANTHER:PTHR13047:SF1	SUPFAM:SSF55811	UniParc:UPI0006EE18A4	SEG:seg

Description

hypothetical protein

Coordinates

chr9:-:6549821..6554431

Molecular Weight (calculated)

25604.3 Da

IEP (calculated)

6.788

GRAVY (calculated)

-0.279

Length

225 amino acids

Sequence
(BLAST)

001: MGEEEEEEVS VTALHHPNSG NDDQSLEFDI YPLSSYYFGS KDAVPSKDLT LVDRVLRMKS NYAASGIRTC VEAVLLVELF KHPHLLLLQI RNSIYKLPGG
101: RLRPGESDTD GLKRKLARKL SVNEDGDGSE WEVGECLGMW WRPDFETLMY PFIPPNVKKP KECTKVFLVK LPESRKFIVP KNMRVLAVPL CQVHENHKDP
201: VMLERMLGLL ILTMPKGESR LILTV

Best Arabidopsis Sequence Match ( AT4G29820.1 )
(BLAST)

001: MGEEARALDM EEISDNTTRR NDVVHDLMVD LYPLSSYYFG SKEALRVKDE IISDRVIRLK SNYAAHGLRT CVEAVLLVEL FKHPHVLLLQ YRNSIFKLPG
101: GRLRPGESDI EGLKRKLASK LSVNENVGVS GYEVGECIGM WWRPNFETLM YPFLPPNIKH PKECTKLFLV RLPVHQQFVV PKNFKLLAVP LCQLHENEKT
201: YGPIMSQIPK LLSKFSFNMM EI

Arabidopsis Description

CFIS1Pre-mRNA cleavage factor Im 25 kDa subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94AF0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.