CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01102
KRH04366
KRH12426
KRH28314
KRH40151
KRH48783
KRH58171
KRH66562
KRH77172

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06710.1	KRH01102	AT3G60390.1	21798944
AT5G06710.1	KRH40151	AT3G60390.1	21798944
AT5G06710.1	KRH48783	AT3G60390.1	21798944
AT5G06710.1	KRH66562	AT3G60390.1	21798944
AT5G06710.1	KRH12426	AT4G26100.1	21798944
AT5G06710.1	KRH04366	AT4G37790.1	21798944
AT5G06710.1	KRH28314	AT4G37790.1	21798944
AT5G06710.1	KRH58171	AT4G37790.1	21798944
AT5G06710.1	KRH77172	AT4G37790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0447000-00	Rice	nucleus	26.14	95.56
KRH38083	Soybean	nucleus	92.1	92.66
KRG95402	Soybean	nucleus, plastid	58.36	65.75
KRH67080	Soybean	nucleus	57.14	65.28
VIT_08s0007g06670.t01	Wine grape	nucleus	65.65	65.26
GSMUA_Achr3P07740_001	Banana	nucleus	34.35	58.25
GSMUA_Achr7P02380_001	Banana	nucleus	43.77	50.0
KRH43419	Soybean	nucleus	57.14	49.87
KRH40151	Soybean	nucleus	34.04	48.91
CDX81016	Canola	nucleus	38.6	48.85
AT5G06710.1	Thale cress	nucleus	49.85	48.81
KRH13873	Soybean	nucleus	56.84	48.7
KRH77331	Soybean	nucleus	39.51	48.51
Zm00001d020670_P001	Maize	nucleus	48.94	48.35
KRH50371	Soybean	nucleus	31.0	47.89
Bra005907.1-P	Field mustard	nucleus	46.5	47.52
CDX98948	Canola	nucleus	48.63	47.2
GSMUA_Achr9P15710_001	Banana	nucleus	44.38	46.79
Bra009219.1-P	Field mustard	nucleus	48.33	46.76
CDX70076	Canola	nucleus	48.33	46.76
CDY55775	Canola	nucleus	45.59	46.58
KRG89300	Soybean	nucleus	31.0	46.58
KRH57467	Soybean	nucleus	41.64	45.97
GSMUA_Achr8P22800_001	Banana	nucleus	36.78	45.66
KRH28155	Soybean	nucleus	39.51	45.61
KRH04179	Soybean	nucleus	41.34	45.48
KRH12370	Soybean	nucleus	31.0	45.13
KRH28314	Soybean	nucleus	38.6	44.88
TraesCS5D01G235300.1	Wheat	nucleus	46.2	44.84
Zm00001d005875_P001	Maize	nucleus	43.47	44.0
KRH77172	Soybean	nucleus	37.69	43.82
KRH37372	Soybean	nucleus	31.31	43.46
TraesCS5B01G231300.1	Wheat	nucleus	46.5	43.1
EER98990	Sorghum	nucleus	48.33	43.09
TraesCS5A01G232700.1	Wheat	nucleus	45.59	42.73
KRH48783	Soybean	nucleus	40.43	41.96
KRH19131	Soybean	nucleus	27.05	41.78
KRH66562	Soybean	nucleus	39.21	41.61
KRH01102	Soybean	nucleus	36.47	41.38
KRH02731	Soybean	nucleus	26.14	41.15
KRH04366	Soybean	nucleus	38.91	41.03
KRH58171	Soybean	extracellular, nucleus	37.99	40.98
CDX78884	Canola	nucleus	30.7	40.08
KXG25294	Sorghum	nucleus	45.9	39.53
HORVU5Hr1G067010.2	Barley	nucleus	45.59	38.17
KRH61469	Soybean	nucleus	30.7	34.83
KRH15480	Soybean	nucleus	31.91	34.43
Zm00001d031745_P001	Maize	plastid	44.98	33.41
KRG88660	Soybean	nucleus	31.0	33.01

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100779138	MapMan:15.5.3.1	UniProt:A0A0R0KY17	EMBL:ACUP02001081	ncoils:Coil
EnsemblPlantsGene:GLYMA_02G171300	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	EnsemblPlants:KRH71831	ProteinID:KRH71831	ProteinID:KRH71831.1
InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326
PANTHER:PTHR24326:SF514	SMART:SM00340	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI000189DA3A	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:26916212..26918902

Molecular Weight (calculated)

36494.9 Da

IEP (calculated)

8.203

GRAVY (calculated)

-0.661

Length

329 amino acids

Sequence
(BLAST)

001: MELALSLGDT SKSFTFLDKA AVNLPTNKDP PGLFSLAPSF AATAAAADKR SDAAERRGFS SDPPVQLDLL PFSPVLRPQQ QPPSQLRIPW LTEACGAARV
101: LDVNLFRAAT AEDGDDGTSL SSSPNSAVSP FQMDFCTRNC NAEFGGRNKR EQQEAEGRAS DDDENGSTRK KLRLSKEQSA FLEESFKEHT TLNPKQKLAL
201: AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CEYLKRCCET LTEENRRLQK ELQELRALKT SQPFYMQLPA TTLTMCPSCE RVATNSTTTN QTTTVNNNAS
301: QIPVELSLSK PRILPFPNGQ AQAHQIASS

Best Arabidopsis Sequence Match ( AT5G06710.1 )
(BLAST)

001: MELALSLGDN TKKQFSFMEK NSKINNPSVS STSTSEKDLG FCMALDVAFG GHRSLSSSSS PSVEDEKKKP APRAKKSDEF RVSSSVDPPL QLQLHFPNWL
101: PENSKGRQGG RMPLGAATVV EEEEEEEEAV PSMSVSPPDS VTSSFQLDFG IKSYGYERRS NKRDIDDEVE RSASRASNED NDDENGSTRK KLRLSKDQSA
201: FLEDSFKEHS TLNPKQKIAL AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CEYLKRCCES LTEENRRLQK EVKELRTLKT STPFYMQLPA TTLTMCPSCE
301: RVATSAAQPS TSAAHNLCLS TSSLIPVKPR PAKQVS

Arabidopsis Description

HAT14Homeobox-leucine zipper protein HAT14 [Source:UniProtKB/Swiss-Prot;Acc:P46665]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.