CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91429
KRG95402
KRH01102
KRH04179
KRH04275
KRH13873
KRH28155
KRH28216
KRH35393
KRH38083
KRH40151
KRH43419
KRH48783
KRH52586
KRH57467
KRH57556
KRH61926
KRH66562
KRH67080
KRH71831
KRH77271
KRH77331

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G16780.1	KRH52586	AT1G22920.1	21798944
AT4G16780.1	KRH61926	AT1G22920.1	21798944
AT4G16780.1	KRH52586	AT1G71230.1	21798944
AT4G16780.1	KRH61926	AT1G71230.1	21798944
AT4G16780.1	KRH01102	AT3G60390.1	21798944
AT4G16780.1	KRH40151	AT3G60390.1	21798944
AT4G16780.1	KRH48783	AT3G60390.1	21798944
AT4G16780.1	KRH66562	AT3G60390.1	21798944
AT4G16780.1	KRH04179	AT4G16780.1	21798944
AT4G16780.1	KRH28155	AT4G16780.1	21798944
AT4G16780.1	KRH57467	AT4G16780.1	21798944
AT4G16780.1	KRH77331	AT4G16780.1	21798944
AT4G16780.1	KRH04275	AT4G17680.1	21798944
AT4G16780.1	KRH28216	AT4G17680.1	21798944
AT4G16780.1	KRH57556	AT4G17680.1	21798944
AT4G16780.1	KRH77271	AT4G17680.1	21798944
AT4G16780.1	KRG95402	AT5G06710.1	21798944
AT4G16780.1	KRH13873	AT5G06710.1	21798944
AT4G16780.1	KRH38083	AT5G06710.1	21798944
AT4G16780.1	KRH43419	AT5G06710.1	21798944
AT4G16780.1	KRH67080	AT5G06710.1	21798944
AT4G16780.1	KRH71831	AT5G06710.1	21798944
AT4G16780.1	KRG91429	AT5G51910.1	21798944
AT4G16780.1	KRH35393	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28155	Soybean	nucleus	94.03	88.42
KRH04179	Soybean	nucleus	82.46	73.91
KRH57467	Soybean	nucleus	82.09	73.83
VIT_00s0299g00100.t01	Wine grape	nucleus	79.48	71.72
AT4G16780.1	Thale cress	nucleus	68.28	64.44
Bra040094.1-P	Field mustard	nucleus	66.04	62.11
Solyc06g060830.2.1	Tomato	nucleus	66.79	60.07
GSMUA_Achr5P13530_001	Banana	nucleus	62.31	59.86
KRH40151	Soybean	nucleus	51.12	59.83
GSMUA_Achr7P06950_001	Banana	nucleus	40.3	59.67
GSMUA_Achr11P...	Banana	nucleus	54.48	59.11
GSMUA_Achr2P10040_001	Banana	nucleus	62.69	57.53
PGSC0003DMT400062081	Potato	nucleus	65.3	57.38
GSMUA_Achr4P21600_001	Banana	nucleus	58.21	56.32
Zm00001d002754_P001	Maize	nucleus	47.39	55.95
GSMUA_Achr1P01670_001	Banana	nucleus	61.57	55.56
TraesCS2A01G415900.1	Wheat	nucleus	47.01	55.51
HORVU2Hr1G097940.2	Barley	nucleus	46.27	55.11
EES12613	Sorghum	nucleus	47.76	54.94
TraesCS2D01G412900.1	Wheat	nucleus	46.64	54.35
TraesCS2B01G434900.1	Wheat	nucleus	46.64	54.35
KRH66562	Soybean	nucleus	61.57	53.23
GSMUA_Achr1P04360_001	Banana	nucleus	59.7	52.98
KRH48783	Soybean	nucleus	61.94	52.37
KRH01102	Soybean	nucleus	55.97	51.72
Os04t0548700-01	Rice	nucleus	45.9	49.8
KRH50371	Soybean	nucleus	36.94	46.48
KRG89300	Soybean	nucleus	36.94	45.21
Zm00001d029934_P001	Maize	nucleus	51.87	43.3
TraesCS1B01G232700.2	Wheat	nucleus	52.61	43.12
KRH67080	Soybean	nucleus	46.27	43.06
TraesCS1D01G220900.1	Wheat	nucleus	52.24	42.94
GSMUA_AchrUn_...	Banana	plastid	49.63	42.63
TraesCS1A01G219200.1	Wheat	nucleus	51.49	41.95
Os10t0561800-01	Rice	nucleus	48.13	41.48
KRH28314	Soybean	nucleus	43.66	41.34
KRH12370	Soybean	nucleus	34.7	41.15
KRG95402	Soybean	nucleus, plastid	44.78	41.1
EER94486	Sorghum	nucleus	52.99	41.04
KRH77172	Soybean	nucleus	42.54	40.28
KRH02731	Soybean	nucleus	31.34	40.19
KRH38083	Soybean	nucleus	48.88	40.06
KRH71831	Soybean	plastid	48.51	39.51
KRH19131	Soybean	nucleus	31.34	39.44
KRH37372	Soybean	nucleus	34.33	38.82
KRH04366	Soybean	nucleus	44.78	38.46
HORVU1Hr1G055930.1	Barley	nucleus	51.49	38.23
KRH58171	Soybean	extracellular, nucleus	42.91	37.7
KRH43419	Soybean	nucleus	50.0	35.54
KRH13873	Soybean	nucleus	50.0	34.9
KRH15480	Soybean	nucleus	36.57	32.13
KRH61469	Soybean	nucleus	33.96	31.38
KRG88660	Soybean	nucleus	35.82	31.07

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EntrezGene:547858	EMBL:ACUP02000669	ncoils:Coil	EnsemblPlantsGene:GLYMA_01G207300
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HD-ZIP_N	InterPro:HTH_motif
InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:K7K4Y9	EnsemblPlants:KRH77331
ProteinID:KRH77331	ProteinID:KRH77331.1	InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	PFAM:PF04618
PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF210	SMART:SM00340
SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI00023373F8	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:53930291..53932135

Molecular Weight (calculated)

30102.5 Da

IEP (calculated)

8.076

GRAVY (calculated)

-0.747

Length

268 amino acids

Sequence
(BLAST)

001: MTVQKEDLGL SLSLSFPLLS SSPSSHNPQK PSWNDPIFTS SGEAGSFLRG IDVNRLPSVV DCEEEAGVSS PNSTVSSVSG KRSERETNGE ENDTDRACSR
101: GIISDEEDAE TSRKKLRLSK DQSIVLEESF KEHNTLNPKQ KLALAKQLGL RARQVEVWFQ NRRARTKLKQ TEVDCEFLKR CCENLTEENR RLQKEVQELR
201: ALKLSPQFYM HMTPPTTLTM CPSCERVAVP PSSAVDPATR HHHVPPSHPR AFPIGPWARP FDALRPRS

Best Arabidopsis Sequence Match ( AT4G16780.1 )
(BLAST)

001: MMFEKDDLGL SLGLNFPKKQ INLKSNPSVS VTPSSSSFGL FRRSSWNESF TSSVPNSDSS QKETRTFIRG IDVNRPPSTA EYGDEDAGVS SPNSTVSSST
101: GKRSEREEDT DPQGSRGISD DEDGDNSRKK LRLSKDQSAI LEETFKDHST LNPKQKQALA KQLGLRARQV EVWFQNRRAR TKLKQTEVDC EFLRRCCENL
201: TEENRRLQKE VTELRALKLS PQFYMHMSPP TTLTMCPSCE HVSVPPPQPQ AATSAHHRSL PVNAWAPATR ISHGLTFDAL RPRS

Arabidopsis Description

HAT4Homeobox-leucine zipper protein HAT4 [Source:UniProtKB/Swiss-Prot;Acc:Q05466]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.