Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G219200.1 | Wheat | nucleus | 96.93 | 96.05 |
| TraesCS1B01G232700.2 | Wheat | nucleus | 96.32 | 96.02 |
| HORVU1Hr1G055930.1 | Barley | nucleus | 92.94 | 83.93 |
| Os10t0561800-01 | Rice | nucleus | 62.58 | 65.59 |
| TraesCS2D01G412900.1 | Wheat | nucleus | 42.94 | 60.87 |
| Zm00001d029934_P001 | Maize | nucleus | 59.51 | 60.44 |
| EER94486 | Sorghum | nucleus | 63.19 | 59.54 |
| KRH77331 | Soybean | nucleus | 42.94 | 52.24 |
| Solyc08g078300.2.1 | Tomato | nucleus | 42.94 | 50.0 |
| PGSC0003DMT400067540 | Potato | nucleus | 42.02 | 49.82 |
| GSMUA_Achr4P21600_001 | Banana | nucleus | 41.41 | 48.74 |
| KRH57467 | Soybean | nucleus | 44.48 | 48.66 |
| KRH28155 | Soybean | nucleus | 42.02 | 48.07 |
| Solyc08g007270.2.1 | Tomato | nucleus | 40.49 | 48.0 |
| KRH04179 | Soybean | nucleus | 43.87 | 47.83 |
| VIT_00s0299g00100.t01 | Wine grape | nucleus | 43.25 | 47.47 |
| AT4G16780.1 | Thale cress | nucleus | 41.1 | 47.18 |
| GSMUA_AchrUn_... | Banana | plastid | 45.09 | 47.12 |
| PGSC0003DMT400032546 | Potato | nucleus | 39.88 | 46.43 |
| Bra040094.1-P | Field mustard | nucleus | 40.49 | 46.32 |
| TraesCS3D01G009700.1 | Wheat | nucleus | 30.67 | 44.25 |
| GSMUA_Achr7P06950_001 | Banana | nucleus | 24.54 | 44.2 |
| Solyc06g060830.2.1 | Tomato | nucleus | 39.57 | 43.29 |
| TraesCS6D01G110400.1 | Wheat | nucleus | 25.46 | 43.23 |
| GSMUA_Achr1P04360_001 | Banana | nucleus | 39.57 | 42.72 |
| PGSC0003DMT400062081 | Potato | nucleus | 39.88 | 42.62 |
| TraesCS7D01G417700.1 | Wheat | nucleus | 28.83 | 42.34 |
| TraesCS4D01G236600.1 | Wheat | nucleus | 35.28 | 41.97 |
| TraesCS3D01G221800.1 | Wheat | nucleus | 27.61 | 40.54 |
| TraesCS7D01G079000.1 | Wheat | nucleus | 32.82 | 39.78 |
| TraesCS7D01G078900.1 | Wheat | nucleus | 33.44 | 38.93 |
| TraesCS5D01G235300.1 | Wheat | nucleus | 40.18 | 38.64 |
| TraesCS7D01G078800.1 | Wheat | nucleus | 34.97 | 38.38 |
| TraesCS6D01G110600.1 | Wheat | nucleus | 25.77 | 37.33 |
| TraesCS1D01G379700.1 | Wheat | nucleus | 32.82 | 35.2 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | InterPro:HD-ZIP_N | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom |
| InterPro:IPR001356 | InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | PFAM:PF04618 | PRINTS:PR00031 |
| ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF210 | SMART:SM00340 | SMART:SM00389 |
| SUPFAM:SSF46689 | EnsemblPlantsGene:TraesCS1D01G220900 | EnsemblPlants:TraesCS1D01G220900.1 | TIGR:cd00086 | SEG:seg | : |
Description
No Description!
Coordinates
chr1D:-:308459300..308460410
Molecular Weight (calculated)
34693.0 Da
IEP (calculated)
8.712
GRAVY (calculated)
-0.577
Length
326 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMTVNGRDT EHHLGLGLGL GLSLGMSGTT SPVEPAAPQH AVTAAAPSTL GRQQQLSWNG AGLFFPASSG EQRSHADDRR LAALACHEMP FLRGIDVNRA
101: PATGGARGSC AASEDEEPGA SSPDSTLSSL SGKRGAPTRS GGGEQERAGA GSDDEDDSGA GGAGSRKKLR LSKDQSAVLE DSFKEHSTLN PKQKAALARQ
201: LGLRPRQVEV WFQNRRARTK LKQTEVDCES LKRCCETLTE ENRRLQREVQ ELRALKLLAP PAPHLYMRAP PPTTLTMCPS CERVAPSGKP VVDESRAAMV
301: TRAVPTGPWG PVPVLPVFLG RPAQRS
101: PATGGARGSC AASEDEEPGA SSPDSTLSSL SGKRGAPTRS GGGEQERAGA GSDDEDDSGA GGAGSRKKLR LSKDQSAVLE DSFKEHSTLN PKQKAALARQ
201: LGLRPRQVEV WFQNRRARTK LKQTEVDCES LKRCCETLTE ENRRLQREVQ ELRALKLLAP PAPHLYMRAP PPTTLTMCPS CERVAPSGKP VVDESRAAMV
301: TRAVPTGPWG PVPVLPVFLG RPAQRS
001: MSERDDGLGL SLSLSLGFNQ KDPSSRLNPM PLASYASSSH MQHMQQSNYN HPQKIQNTWI NMFQSSERNS DMRSFLRGID VNRAPSTVVV DVEDEGAGVS
101: SPNSTVSSVM SGKKSERELM AAAGAVGGGR VEDNEIERAS CSLGGGSDDE DGSGNGDDSS RKKLRLSKEQ ALVLEETFKE HSTLNPKQKM ALAKQLNLRT
201: RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ENLTDENRRL QKEVSELRAL KLSPHLYMHM KPPTTLTMCP SCERVAVTSS SSSVAPPVMN SSSPMGPMSP
301: WAAMPLRQRP AAGSH
101: SPNSTVSSVM SGKKSERELM AAAGAVGGGR VEDNEIERAS CSLGGGSDDE DGSGNGDDSS RKKLRLSKEQ ALVLEETFKE HSTLNPKQKM ALAKQLNLRT
201: RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ENLTDENRRL QKEVSELRAL KLSPHLYMHM KPPTTLTMCP SCERVAVTSS SSSVAPPVMN SSSPMGPMSP
301: WAAMPLRQRP AAGSH
Arabidopsis Description
HAT3Homeobox-leucine zipper protein HAT3 [Source:UniProtKB/Swiss-Prot;Acc:P46602]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.