Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G220900.1 | Wheat | nucleus | 96.02 | 96.32 |
| TraesCS1A01G219200.1 | Wheat | nucleus | 94.8 | 94.22 |
| HORVU1Hr1G055930.1 | Barley | nucleus | 90.83 | 82.27 |
| Os10t0561800-01 | Rice | nucleus | 62.39 | 65.59 |
| Zm00001d029934_P001 | Maize | nucleus | 59.33 | 60.44 |
| EER94486 | Sorghum | nucleus | 63.61 | 60.12 |
| TraesCS2B01G434900.1 | Wheat | nucleus | 41.28 | 58.7 |
| KRH77331 | Soybean | nucleus | 43.12 | 52.61 |
| Solyc08g078300.2.1 | Tomato | nucleus | 42.2 | 49.29 |
| PGSC0003DMT400067540 | Potato | nucleus | 41.28 | 49.09 |
| GSMUA_Achr4P21600_001 | Banana | nucleus | 41.28 | 48.74 |
| KRH28155 | Soybean | nucleus | 42.2 | 48.42 |
| Solyc08g007270.2.1 | Tomato | nucleus | 40.67 | 48.36 |
| KRH57467 | Soybean | nucleus | 44.04 | 48.32 |
| KRH04179 | Soybean | nucleus | 43.73 | 47.83 |
| AT4G16780.1 | Thale cress | nucleus | 41.28 | 47.54 |
| VIT_00s0299g00100.t01 | Wine grape | nucleus | 43.12 | 47.47 |
| GSMUA_AchrUn_... | Banana | plastid | 44.95 | 47.12 |
| Bra040094.1-P | Field mustard | nucleus | 40.98 | 47.02 |
| PGSC0003DMT400032546 | Potato | nucleus | 40.06 | 46.79 |
| GSMUA_Achr7P06950_001 | Banana | nucleus | 24.46 | 44.2 |
| TraesCS3B01G000100.1 | Wheat | nucleus | 29.97 | 42.98 |
| Solyc06g060830.2.1 | Tomato | nucleus | 39.14 | 42.95 |
| TraesCS7B01G326300.1 | Wheat | nucleus | 29.05 | 42.6 |
| GSMUA_Achr1P04360_001 | Banana | nucleus | 39.14 | 42.38 |
| PGSC0003DMT400062081 | Potato | nucleus | 39.45 | 42.3 |
| TraesCS4B01G235300.2 | Wheat | nucleus | 36.09 | 42.29 |
| TraesCS3B01G260800.1 | Wheat | nucleus | 28.13 | 41.44 |
| TraesCS6B01G148800.1 | Wheat | nucleus | 26.3 | 41.15 |
| TraesCS6B01G148700.1 | Wheat | nucleus | 25.69 | 40.19 |
| TraesCS6B01G149000.1 | Wheat | nucleus | 25.38 | 37.73 |
| TraesCS5B01G231300.1 | Wheat | nucleus | 39.45 | 36.34 |
| TraesCS1B01G393100.1 | Wheat | nucleus | 33.33 | 35.62 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | InterPro:HD-ZIP_N | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom |
| InterPro:IPR001356 | InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | PFAM:PF04618 | PRINTS:PR00031 |
| ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF199 | SMART:SM00340 | SMART:SM00389 |
| SUPFAM:SSF46689 | EnsemblPlantsGene:TraesCS1B01G232700 | EnsemblPlants:TraesCS1B01G232700.2 | TIGR:cd00086 | SEG:seg | : |
Description
No Description!
Coordinates
chr1B:-:418105692..418106801
Molecular Weight (calculated)
34777.1 Da
IEP (calculated)
8.712
GRAVY (calculated)
-0.598
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMTVNGRDT EHHHHLGLAL GLGLGLSLGM SGTTSPVEPA APQTAAAPSS KLGLGQQSWN GAGLFFPASS GEQRSHADDR RLAALACHEM PFLRGIDVNR
101: APTTGGARGS CGASEDEEPG ASSPDSTLSS LSGKRGAPTR SAGGEQERTG AGSDDEDDSG AGGGGSRKKL RLSKDQSAVL EDSFKEHSTL NPKQKAALAR
201: QLGLRPRQVE VWFQNRRART KLKQTEVDCE SLKRCCETLT EENRRLQREV QELRALKLLA PPAPHLYMRA PPPTTLTMCP SCERVAPSGK PVVDESRAAM
301: VTRAVPTGPW GPVPVLPVFL GRPAQRS
101: APTTGGARGS CGASEDEEPG ASSPDSTLSS LSGKRGAPTR SAGGEQERTG AGSDDEDDSG AGGGGSRKKL RLSKDQSAVL EDSFKEHSTL NPKQKAALAR
201: QLGLRPRQVE VWFQNRRART KLKQTEVDCE SLKRCCETLT EENRRLQREV QELRALKLLA PPAPHLYMRA PPPTTLTMCP SCERVAPSGK PVVDESRAAM
301: VTRAVPTGPW GPVPVLPVFL GRPAQRS
001: MSERDDGLGL SLSLSLGFNQ KDPSSRLNPM PLASYASSSH MQHMQQSNYN HPQKIQNTWI NMFQSSERNS DMRSFLRGID VNRAPSTVVV DVEDEGAGVS
101: SPNSTVSSVM SGKKSERELM AAAGAVGGGR VEDNEIERAS CSLGGGSDDE DGSGNGDDSS RKKLRLSKEQ ALVLEETFKE HSTLNPKQKM ALAKQLNLRT
201: RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ENLTDENRRL QKEVSELRAL KLSPHLYMHM KPPTTLTMCP SCERVAVTSS SSSVAPPVMN SSSPMGPMSP
301: WAAMPLRQRP AAGSH
101: SPNSTVSSVM SGKKSERELM AAAGAVGGGR VEDNEIERAS CSLGGGSDDE DGSGNGDDSS RKKLRLSKEQ ALVLEETFKE HSTLNPKQKM ALAKQLNLRT
201: RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ENLTDENRRL QKEVSELRAL KLSPHLYMHM KPPTTLTMCP SCERVAVTSS SSSVAPPVMN SSSPMGPMSP
301: WAAMPLRQRP AAGSH
Arabidopsis Description
HAT3Homeobox-leucine zipper protein HAT3 [Source:UniProtKB/Swiss-Prot;Acc:P46602]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.