Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G415900.1 | Wheat | nucleus | 94.78 | 96.04 |
| TraesCS2D01G412900.1 | Wheat | nucleus | 95.22 | 95.22 |
| HORVU2Hr1G097940.2 | Barley | nucleus | 90.87 | 92.89 |
| Zm00001d002754_P001 | Maize | nucleus | 79.13 | 80.18 |
| EES12613 | Sorghum | nucleus | 80.87 | 79.83 |
| Os04t0548700-01 | Rice | nucleus | 83.04 | 77.33 |
| KRH77331 | Soybean | nucleus | 54.35 | 46.64 |
| PGSC0003DMT400067540 | Potato | nucleus | 52.61 | 44.0 |
| Solyc08g078300.2.1 | Tomato | nucleus | 53.04 | 43.57 |
| Solyc08g007270.2.1 | Tomato | nucleus | 51.3 | 42.91 |
| KRH28155 | Soybean | nucleus | 53.04 | 42.81 |
| PGSC0003DMT400032546 | Potato | nucleus | 51.3 | 42.14 |
| Bra040094.1-P | Field mustard | nucleus | 51.3 | 41.4 |
| TraesCS1B01G232700.2 | Wheat | nucleus | 58.7 | 41.28 |
| AT4G16780.1 | Thale cress | nucleus | 50.87 | 41.2 |
| KRH57467 | Soybean | nucleus | 53.04 | 40.94 |
| GSMUA_Achr4P21600_001 | Banana | nucleus | 49.13 | 40.79 |
| VIT_00s0299g00100.t01 | Wine grape | nucleus | 52.61 | 40.74 |
| GSMUA_AchrUn_... | Banana | plastid | 54.78 | 40.38 |
| TraesCS3B01G000100.1 | Wheat | nucleus | 40.0 | 40.35 |
| KRH04179 | Soybean | nucleus | 52.17 | 40.13 |
| TraesCS3B01G260800.1 | Wheat | nucleus | 38.26 | 39.64 |
| Solyc06g060830.2.1 | Tomato | nucleus | 50.43 | 38.93 |
| TraesCS7B01G326300.1 | Wheat | nucleus | 37.39 | 38.56 |
| PGSC0003DMT400062081 | Potato | nucleus | 50.43 | 38.03 |
| TraesCS6B01G148800.1 | Wheat | nucleus | 33.91 | 37.32 |
| TraesCS4B01G235300.2 | Wheat | nucleus | 44.78 | 36.92 |
| TraesCS6B01G148700.1 | Wheat | nucleus | 32.61 | 35.89 |
| GSMUA_Achr1P04360_001 | Banana | nucleus | 46.96 | 35.76 |
| GSMUA_Achr7P06950_001 | Banana | nucleus | 26.09 | 33.15 |
| TraesCS5B01G231300.1 | Wheat | nucleus | 50.0 | 32.39 |
| TraesCS6B01G149000.1 | Wheat | nucleus | 30.87 | 32.27 |
| TraesCS1B01G393100.1 | Wheat | nucleus | 37.39 | 28.1 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS |
| InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | PRINTS:PR00031 |
| ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF199 | SMART:SM00340 | SMART:SM00389 |
| SUPFAM:SSF46689 | EnsemblPlantsGene:TraesCS2B01G434900 | EnsemblPlants:TraesCS2B01G434900.1 | TIGR:cd00086 | SEG:seg | : |
Description
No Description!
Coordinates
chr2B:+:624891321..624892387
Molecular Weight (calculated)
26198.0 Da
IEP (calculated)
8.602
GRAVY (calculated)
-0.942
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MMERAEDLGL SLSLSSSLTP RTHHVAMQLH APERRFLEMP LLPAKRVCEV SADEERSSQR GGSDDEDGGC GMDGSRKKLR LSKDQSAVLE DSFREHPTLN
101: PRQKAALAQQ LGLRSRQVEV WFQNRRARTK LKQTEVDCEF LKRCCETLTE ENRRLQKEVQ ELRALKLVSP HQYMHMSPPT TLTMCPSCER VSNNNNNNNN
201: NNNNNNTADR RNGVEGAICH RPIAVRPQHS
101: PRQKAALAQQ LGLRSRQVEV WFQNRRARTK LKQTEVDCEF LKRCCETLTE ENRRLQKEVQ ELRALKLVSP HQYMHMSPPT TLTMCPSCER VSNNNNNNNN
201: NNNNNNTADR RNGVEGAICH RPIAVRPQHS
001: MSERDDGLGL SLSLSLGFNQ KDPSSRLNPM PLASYASSSH MQHMQQSNYN HPQKIQNTWI NMFQSSERNS DMRSFLRGID VNRAPSTVVV DVEDEGAGVS
101: SPNSTVSSVM SGKKSERELM AAAGAVGGGR VEDNEIERAS CSLGGGSDDE DGSGNGDDSS RKKLRLSKEQ ALVLEETFKE HSTLNPKQKM ALAKQLNLRT
201: RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ENLTDENRRL QKEVSELRAL KLSPHLYMHM KPPTTLTMCP SCERVAVTSS SSSVAPPVMN SSSPMGPMSP
301: WAAMPLRQRP AAGSH
101: SPNSTVSSVM SGKKSERELM AAAGAVGGGR VEDNEIERAS CSLGGGSDDE DGSGNGDDSS RKKLRLSKEQ ALVLEETFKE HSTLNPKQKM ALAKQLNLRT
201: RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ENLTDENRRL QKEVSELRAL KLSPHLYMHM KPPTTLTMCP SCERVAVTSS SSSVAPPVMN SSSPMGPMSP
301: WAAMPLRQRP AAGSH
Arabidopsis Description
HAT3Homeobox-leucine zipper protein HAT3 [Source:UniProtKB/Swiss-Prot;Acc:P46602]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.