Factsheet for Bra040094.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005907.1-P
Bra007530.1-P
Bra009219.1-P
Bra012351.1-P
Bra012650.1-P
Bra017489.1-P
Bra022568.1-P
Bra024548.1-P
Bra024948.1-P
Bra040094.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G16780.1	Bra012351.1-P	AT1G22920.1	21798944
AT4G16780.1	Bra024548.1-P	AT1G22920.1	21798944
AT4G16780.1	Bra007530.1-P	AT3G60390.1	21798944
AT4G16780.1	Bra040094.1-P	AT4G16780.1	21798944
AT4G16780.1	Bra012650.1-P	AT4G17680.1	21798944
AT4G16780.1	Bra005907.1-P	AT5G06710.1	21798944
AT4G16780.1	Bra009219.1-P	AT5G06710.1	21798944
AT4G16780.1	Bra017489.1-P	AT5G47370.1	21798944
AT4G16780.1	Bra024948.1-P	AT5G47370.1	21798944
AT4G16780.1	Bra022568.1-P	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G16780.1	Thale cress	nucleus	92.63	92.96
KRH77331	Soybean	nucleus	62.11	66.04
VIT_00s0299g00100.t01	Wine grape	nucleus	67.02	64.31
KRH28155	Soybean	nucleus	63.86	63.86
KRH57467	Soybean	nucleus	64.21	61.41
GSMUA_Achr11P...	Banana	nucleus	52.28	60.32
KRH04179	Soybean	nucleus	62.81	59.87
Solyc06g060830.2.1	Tomato	nucleus	58.95	56.38
Bra017489.1-P	Field mustard	nucleus	53.33	56.3
GSMUA_Achr5P13530_001	Banana	nucleus	55.09	56.27
Bra024948.1-P	Field mustard	nucleus	54.39	56.16
GSMUA_Achr2P10040_001	Banana	nucleus	55.44	54.11
PGSC0003DMT400062081	Potato	nucleus	57.89	54.1
Bra026255.1-P	Field mustard	nucleus	51.93	54.01
GSMUA_Achr7P06950_001	Banana	nucleus	34.04	53.59
HORVU2Hr1G097940.2	Barley	nucleus	41.75	52.89
GSMUA_Achr4P21600_001	Banana	nucleus	50.88	52.35
Bra007530.1-P	Field mustard	nucleus	56.84	52.09
TraesCS2A01G415900.1	Wheat	nucleus	41.4	51.98
GSMUA_Achr1P01670_001	Banana	nucleus	54.04	51.85
Zm00001d002754_P001	Maize	nucleus	41.05	51.54
TraesCS2B01G434900.1	Wheat	nucleus	41.4	51.3
Bra004874.1-P	Field mustard	nucleus	52.98	51.19
TraesCS2D01G412900.1	Wheat	nucleus	41.05	50.87
Bra026666.1-P	Field mustard	nucleus	27.72	50.64
Bra012663.1-P	Field mustard	nucleus	49.82	49.82
EES12613	Sorghum	nucleus	40.7	49.79
GSMUA_Achr1P04360_001	Banana	nucleus	49.82	47.02
Os04t0548700-01	Rice	nucleus	40.35	46.56
Bra017451.1-P	Field mustard	nucleus	25.96	46.25
Bra040335.1-P	Field mustard	nucleus	50.18	44.55
Bra024888.1-P	Field mustard	nucleus	29.82	43.15
Bra010612.1-P	Field mustard	nucleus	39.65	41.85
Bra017853.1-P	Field mustard	nucleus	41.05	41.64
Bra030200.1-P	Field mustard	nucleus	41.05	41.64
Bra011786.1-P	Field mustard	nucleus	41.05	41.49
Bra007952.1-P	Field mustard	nucleus	29.82	41.46
GSMUA_AchrUn_...	Banana	plastid	44.91	41.03
TraesCS1B01G232700.2	Wheat	nucleus	47.02	40.98
Bra016174.1-P	Field mustard	nucleus	29.82	40.67
TraesCS1D01G220900.1	Wheat	nucleus	46.32	40.49
TraesCS1A01G219200.1	Wheat	nucleus	46.67	40.43
Zm00001d029934_P001	Maize	nucleus	44.91	39.88
Os10t0561800-01	Rice	nucleus	42.46	38.91
Bra009219.1-P	Field mustard	nucleus	46.32	38.82
Bra005907.1-P	Field mustard	nucleus	43.16	38.2
EER94486	Sorghum	nucleus	46.32	38.15
HORVU1Hr1G055930.1	Barley	nucleus	45.96	36.29

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EnsemblPlantsGene:Bra040094	EnsemblPlants:Bra040094.1	EnsemblPlants:Bra040094.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008283
GO:GO:0009058	GO:GO:0009628	GO:GO:0009641	GO:GO:0009653	GO:GO:0009719	GO:GO:0009733
GO:GO:0009735	GO:GO:0009826	GO:GO:0009987	GO:GO:0010016	GO:GO:0010017	GO:GO:0010218
GO:GO:0016043	GO:GO:0016049	GO:GO:0040007	GO:GO:0042803	GO:GO:0043565	GO:GO:0045892
GO:GO:0048364	InterPro:HD-ZIP_N	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M4FG67	PFAM:PF00046	PFAM:PF02183	PFAM:PF04618
PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF210	SMART:SM00340
SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0002544328	SEG:seg	:	:

Description

AT4G16780 (E=3e-124) ATHB-2, HAT4, ATHB2 | ATHB-2 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2); DNA binding / protein homodimerization/ sequence-specific DNA binding / transcription factor

Coordinates

chrA01:-:10700478..10701544

Molecular Weight (calculated)

31981.5 Da

IEP (calculated)

9.277

GRAVY (calculated)

-0.867

Length

285 amino acids

Sequence
(BLAST)

001: MMFEKDDLGL SLGLNLPKKQ MNLKSNPSVS LTPSSSSFGL LRRSSFNESF NSSVPYSDSS RVETRTFIRG IDVNQPPSTA EYGDKDAGVS SPNSTVSSST
101: GKRSEREEDT DPQGSRGISD DEDGDNSRKK LRLSKDQSAI LEETFKDHST LNPKQKQALA KQLGLRARQV EVWFQNRRAR TKLKQTEVDC EFLRRCCENL
201: TEENRRLQKE VTELRSLKLS PQFYMHMNPP TTLTMCPSCE HVSVPPPPPQ VAASGHHQRS LPVNPWAPAT RVSHGLTFDA FRPRS

Best Arabidopsis Sequence Match ( AT4G16780.1 )
(BLAST)

001: MMFEKDDLGL SLGLNFPKKQ INLKSNPSVS VTPSSSSFGL FRRSSWNESF TSSVPNSDSS QKETRTFIRG IDVNRPPSTA EYGDEDAGVS SPNSTVSSST
101: GKRSEREEDT DPQGSRGISD DEDGDNSRKK LRLSKDQSAI LEETFKDHST LNPKQKQALA KQLGLRARQV EVWFQNRRAR TKLKQTEVDC EFLRRCCENL
201: TEENRRLQKE VTELRALKLS PQFYMHMSPP TTLTMCPSCE HVSVPPPQPQ AATSAHHRSL PVNAWAPATR ISHGLTFDAL RPRS

Arabidopsis Description

HAT4Homeobox-leucine zipper protein HAT4 [Source:UniProtKB/Swiss-Prot;Acc:Q05466]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.