Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P04360_001 | Banana | nucleus | 89.5 | 53.64 |
| GSMUA_Achr4P21600_001 | Banana | nucleus | 74.03 | 48.38 |
| VIT_00s0299g00100.t01 | Wine grape | nucleus | 69.61 | 42.42 |
| KRH77331 | Soybean | nucleus | 59.67 | 40.3 |
| KRH28155 | Soybean | nucleus | 62.43 | 39.65 |
| GSMUA_Achr5P13530_001 | Banana | nucleus | 60.22 | 39.07 |
| Solyc08g078300.2.1 | Tomato | nucleus | 60.22 | 38.93 |
| PGSC0003DMT400067540 | Potato | nucleus | 59.12 | 38.91 |
| KRH57467 | Soybean | nucleus | 62.98 | 38.26 |
| KRH04179 | Soybean | nucleus | 61.88 | 37.46 |
| GSMUA_Achr1P01670_001 | Banana | nucleus | 60.22 | 36.7 |
| GSMUA_Achr2P10040_001 | Banana | nucleus | 58.56 | 36.3 |
| GSMUA_Achr11P... | Banana | nucleus | 49.17 | 36.03 |
| AT4G16780.1 | Thale cress | nucleus | 55.25 | 35.21 |
| Solyc08g007270.2.1 | Tomato | nucleus | 53.04 | 34.91 |
| Bra040094.1-P | Field mustard | nucleus | 53.59 | 34.04 |
| PGSC0003DMT400032546 | Potato | nucleus | 51.38 | 33.21 |
| Solyc06g060830.2.1 | Tomato | nucleus | 53.59 | 32.55 |
| PGSC0003DMT400062081 | Potato | nucleus | 54.7 | 32.46 |
| GSMUA_Achr4P06480_001 | Banana | nucleus | 29.28 | 31.93 |
| GSMUA_Achr9P09800_001 | Banana | nucleus | 39.23 | 29.46 |
| Zm00001d002754_P001 | Maize | nucleus | 35.91 | 28.63 |
| GSMUA_Achr7P27530_001 | Banana | nucleus | 40.33 | 28.4 |
| GSMUA_Achr3P07740_001 | Banana | nucleus | 30.39 | 28.35 |
| GSMUA_Achr6P30180_001 | Banana | nucleus | 38.12 | 27.38 |
| GSMUA_Achr9P26300_001 | Banana | nucleus | 38.67 | 27.13 |
| GSMUA_Achr4P01350_001 | Banana | nucleus | 38.12 | 27.06 |
| EES12613 | Sorghum | nucleus | 34.81 | 27.04 |
| GSMUA_Achr7P02380_001 | Banana | nucleus | 42.54 | 26.74 |
| HORVU2Hr1G097940.2 | Barley | nucleus | 33.15 | 26.67 |
| GSMUA_Achr3P15190_001 | Banana | nucleus | 34.81 | 26.58 |
| TraesCS2D01G412900.1 | Wheat | nucleus | 33.7 | 26.52 |
| TraesCS2A01G415900.1 | Wheat | nucleus | 33.15 | 26.43 |
| TraesCS2B01G434900.1 | Wheat | nucleus | 33.15 | 26.09 |
| Zm00001d029934_P001 | Maize | nucleus | 45.86 | 25.86 |
| Os10t0561800-01 | Rice | nucleus | 43.65 | 25.4 |
| GSMUA_Achr7P15910_001 | Banana | nucleus | 21.55 | 25.32 |
| GSMUA_AchrUn_... | Banana | plastid | 43.65 | 25.32 |
| GSMUA_Achr8P26480_001 | Banana | nucleus | 39.23 | 25.27 |
| GSMUA_Achr6P31710_001 | Banana | nucleus | 39.78 | 25.17 |
| GSMUA_Achr8P22800_001 | Banana | nucleus | 36.46 | 24.91 |
| EER94486 | Sorghum | nucleus | 46.96 | 24.57 |
| TraesCS1D01G220900.1 | Wheat | nucleus | 44.2 | 24.54 |
| TraesCS1B01G232700.2 | Wheat | nucleus | 44.2 | 24.46 |
| GSMUA_Achr9P15710_001 | Banana | nucleus | 41.99 | 24.36 |
| GSMUA_AchrUn_... | Banana | nucleus | 29.28 | 24.31 |
| Os04t0548700-01 | Rice | nucleus | 33.15 | 24.29 |
| TraesCS1A01G219200.1 | Wheat | nucleus | 43.65 | 24.01 |
| GSMUA_AchrUn_... | Banana | nucleus | 36.46 | 23.91 |
| GSMUA_Achr4P13440_001 | Banana | nucleus | 29.83 | 23.79 |
| GSMUA_Achr10P... | Banana | nucleus | 23.2 | 23.08 |
| GSMUA_Achr8P05100_001 | Banana | nucleus | 35.91 | 22.89 |
| GSMUA_Achr7P05000_001 | Banana | nucleus | 23.2 | 22.58 |
| HORVU1Hr1G055930.1 | Barley | nucleus | 44.75 | 22.44 |
| GSMUA_Achr1P10390_001 | Banana | nucleus | 27.62 | 21.55 |
| GSMUA_Achr2P04490_001 | Banana | nucleus | 26.52 | 21.05 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSMUA_Achr7G06950_001 | EnsemblPlants:GSMUA_Achr7P06950_001 |
| EnsemblPlants:GSMUA_Achr7T06950_001 | InterPro:HD-ZIP_N | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:IPR001356 | UniProt:M0TFD5 |
| PFAM:PF00046 | PFAM:PF04618 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF210 | SMART:SM00389 |
| SUPFAM:SSF46689 | UniParc:UPI000296B855 | SEG:seg | : | : | : |
Description
Homeobox-leucine zipper protein HAT2 [Source:GMGC_GENE;Acc:GSMUA_Achr7G06950_001]
Coordinates
chr7:+:5110738..5112278
Molecular Weight (calculated)
19987.2 Da
IEP (calculated)
8.563
GRAVY (calculated)
-0.954
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MMGKDDLGLS LSLSSSSHHH RHLPLQLNLM PSSSASGRPP SPPFPCHQTT QWAVDARSLP LLRGIDVNRA PSSGAVERDS EEDAGASSPN STLSSVSGKR
101: AERDTHLGDE HDPDRGISDE DDGDGSRKKL RLSKDQSAIL EESFKEHNTL NPKQKLALAK QLNLRPRQVE VWFQNRRARR S
101: AERDTHLGDE HDPDRGISDE DDGDGSRKKL RLSKDQSAIL EESFKEHNTL NPKQKLALAK QLNLRPRQVE VWFQNRRARR S
001: MMMGKEDLGL SLSLGFAQNH PLQLNLKPTS SPMSNLQMFP WNQTLVSSSD QQKQQFLRKI DVNSLPTTVD LEEETGVSSP NSTISSTVSG KRRSTEREGT
101: SGGGCGDDLD ITLDRSSSRG TSDEEEDYGG ETCRKKLRLS KDQSAVLEDT FKEHNTLNPK QKLALAKKLG LTARQVEVWF QNRRARTKLK QTEVDCEYLK
201: RCVEKLTEEN RRLEKEAAEL RALKLSPRLY GQMSPPTTLL MCPSCERVAG PSSSNHNQRS VSLSPWLQMA HGSTFDVMRP RS
101: SGGGCGDDLD ITLDRSSSRG TSDEEEDYGG ETCRKKLRLS KDQSAVLEDT FKEHNTLNPK QKLALAKKLG LTARQVEVWF QNRRARTKLK QTEVDCEYLK
201: RCVEKLTEEN RRLEKEAAEL RALKLSPRLY GQMSPPTTLL MCPSCERVAG PSSSNHNQRS VSLSPWLQMA HGSTFDVMRP RS
Arabidopsis Description
HAT1Homeobox-leucine zipper protein HAT1 [Source:UniProtKB/Swiss-Prot;Acc:P46600]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.