Factsheet for GSMUA_Achr4P13440_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P05140_001
GSMUA_Achr5P22810_001
GSMUA_Achr6P01990_001
GSMUA_Achr8P29430_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G70920.1	GSMUA_Achr2P05140_001	AT5G25160.1	21245844
AT1G70920.1	GSMUA_Achr5P22810_001	AT5G25160.1	21245844
AT1G70920.1	GSMUA_Achr6P01990_001	AT5G25160.1	21245844
AT1G70920.1	GSMUA_Achr8P29430_001	AT5G25160.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	nucleus	88.55	92.2
GSMUA_Achr4P06480_001	Banana	nucleus	62.11	84.94
TraesCS3B01G260800.1	Wheat	nucleus	71.81	73.42
TraesCS3A01G231600.1	Wheat	nucleus	71.81	73.42
TraesCS3D01G221800.1	Wheat	nucleus	70.93	72.52
Zm00001d044081_P001	Maize	nucleus	71.81	72.44
Os01t0643600-00	Rice	nucleus	72.25	71.62
EES03343	Sorghum	nucleus	71.37	70.43
Bra026666.1-P	Field mustard	nucleus	43.17	62.82
KRH50371	Soybean	nucleus	58.59	62.44
VIT_01s0011g04870.t01	Wine grape	nucleus	61.23	61.78
CDX77824	Canola	nucleus	54.19	61.5
CDY40379	Canola	nucleus	52.86	61.22
CDY17676	Canola	nucleus	52.86	60.91
Bra024888.1-P	Field mustard	nucleus	52.42	60.41
KRG89300	Soybean	nucleus	58.15	60.27
CDY63827	Canola	nucleus	51.98	60.2
Solyc05g008050.1.1	Tomato	nucleus	55.07	59.81
PGSC0003DMT400078329	Potato	nucleus	55.51	58.6
Bra017451.1-P	Field mustard	nucleus	40.53	57.5
CDY41083	Canola	nucleus	31.28	55.04
CDY03710	Canola	nucleus	48.02	53.17
Bra007952.1-P	Field mustard	nucleus	48.02	53.17
AT1G70920.1	Thale cress	nucleus	48.02	52.91
Bra016174.1-P	Field mustard	nucleus	48.02	52.15
CDX72758	Canola	nucleus	47.58	51.67
CDX96287	Canola	nucleus	40.53	50.83
GSMUA_Achr3P07740_001	Banana	nucleus	40.53	47.42
AT2G01430.1	Thale cress	plasma membrane	53.3	44.0
GSMUA_Achr7P15910_001	Banana	nucleus	29.52	43.51
GSMUA_Achr3P15190_001	Banana	nucleus	39.21	37.55
GSMUA_Achr10P...	Banana	nucleus	29.96	37.36
GSMUA_Achr11P...	Banana	nucleus	39.65	36.44
GSMUA_Achr7P05000_001	Banana	nucleus	29.07	35.48
GSMUA_Achr7P02380_001	Banana	nucleus	44.93	35.42
GSMUA_Achr5P13530_001	Banana	nucleus	42.73	34.77
GSMUA_Achr8P22800_001	Banana	nucleus	39.65	33.96
GSMUA_Achr9P09800_001	Banana	nucleus	35.68	33.61
GSMUA_Achr4P01350_001	Banana	nucleus	37.44	33.33
GSMUA_Achr8P26480_001	Banana	nucleus	40.97	33.1
GSMUA_Achr9P15710_001	Banana	nucleus	45.37	33.01
GSMUA_AchrUn_...	Banana	nucleus	40.09	32.97
GSMUA_Achr4P21600_001	Banana	nucleus	40.09	32.85
GSMUA_Achr9P26300_001	Banana	nucleus	37.0	32.56
GSMUA_Achr2P10040_001	Banana	nucleus	41.85	32.53
GSMUA_Achr8P05100_001	Banana	nucleus	40.53	32.39
GSMUA_Achr6P30180_001	Banana	nucleus	35.24	31.75
GSMUA_Achr1P01670_001	Banana	nucleus	41.41	31.65
GSMUA_Achr7P27530_001	Banana	nucleus	35.24	31.13
GSMUA_Achr1P10390_001	Banana	nucleus	31.72	31.03
GSMUA_AchrUn_...	Banana	plastid	41.85	30.45
GSMUA_Achr6P31710_001	Banana	nucleus	38.33	30.42
GSMUA_Achr2P04490_001	Banana	nucleus	30.4	30.26
GSMUA_Achr1P04360_001	Banana	nucleus	40.09	30.13
GSMUA_Achr7P06950_001	Banana	nucleus	23.79	29.83

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr4G13440_001	EnsemblPlants:GSMUA_Achr4P13440_001	EnsemblPlants:GSMUA_Achr4T13440_001	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M0SNK9	PFAM:PF00046	PFAM:PF02183
ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF114	SMART:SM00340	SMART:SM00389
SUPFAM:SSF46689	UniParc:UPI000294A54F	SEG:seg	:	:	:

Description

Homeobox-leucine zipper protein HOX3 [Source:GMGC_GENE;Acc:GSMUA_Achr4G13440_001]

Coordinates

chr4:-:10017433..10018613

Molecular Weight (calculated)

25031.7 Da

IEP (calculated)

9.361

GRAVY (calculated)

-0.717

Length

227 amino acids

Sequence
(BLAST)

001: MGSLGRSPSG LDLTIGVPGS SSSSSSSSPV WSGRLSFSGG GGGSMRDLDI NQPAYGGEED YPMGSVDEEE EEGGTPRPKK LRLSKEQSRL LEESFTQHHT
101: LNPKQKEALA MKLELRPRQV EVWFQNRRAR TKLKHTEMEC EFLKRCFGSL TQENRRLQRE VEELRALRVA PPTVLSPHTR QPLPASSLTM CPRCERVTAA
201: PHLAPSSAGR HPFRRPATLP FAGIADG

Best Arabidopsis Sequence Match ( AT2G01430.1 )
(BLAST)

001: MIKLLFTYIC TYTYKLYALY HMDYACVCMY KYKGIVTLQV CLFYIKLRVF LSNFTFSSSI LALKNPNNSL IKIMAILPEN SSNLDLTISV PGFSSSPLSD
101: EGSGGGRDQL RLDMNRLPSS EDGDDEEFSH DDGSAPPRKK LRLTREQSRL LEDSFRQNHT LNPKQKEVLA KHLMLRPRQI EVWFQNRRAR SKLKQTEMEC
201: EYLKRWFGSL TEENHRLHRE VEELRAMKVG PTTVNSASSL TMCPRCERVT PAASPSRAVV PVPAKKTFPP QERDR

Arabidopsis Description

ATHB-17Homeobox-leucine zipper protein ATHB-17 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9N6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.