Factsheet for GSMUA_Achr8P05100_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P07740_001	Banana	nucleus	33.1	48.45
GSMUA_Achr3P15190_001	Banana	nucleus	40.14	48.1
GSMUA_AchrUn_...	Banana	nucleus	46.48	47.83
VIT_18s0001g08410.t01	Wine grape	nucleus	44.72	47.04
GSMUA_Achr4P06480_001	Banana	nucleus	27.11	46.39
GSMUA_Achr8P26480_001	Banana	nucleus	45.07	45.55
GSMUA_Achr4P01350_001	Banana	nucleus	40.14	44.71
GSMUA_Achr7P27530_001	Banana	nucleus	39.44	43.58
GSMUA_Achr7P15910_001	Banana	nucleus	23.24	42.86
GSMUA_Achr9P09800_001	Banana	nucleus	36.27	42.74
GSMUA_AchrUn_...	Banana	nucleus	32.75	42.66
GSMUA_Achr9P26300_001	Banana	nucleus	38.38	42.25
GSMUA_Achr10P...	Banana	nucleus	26.76	41.76
GSMUA_Achr11P...	Banana	nucleus	36.27	41.7
GSMUA_Achr4P13440_001	Banana	nucleus	32.39	40.53
GSMUA_Achr6P30180_001	Banana	nucleus	35.56	40.08
GSMUA_Achr2P04490_001	Banana	nucleus	31.69	39.47
GSMUA_Achr5P13530_001	Banana	nucleus	38.73	39.43
GSMUA_Achr7P02380_001	Banana	nucleus	39.44	38.89
GSMUA_Achr7P05000_001	Banana	nucleus	25.35	38.71
GSMUA_Achr1P10390_001	Banana	nucleus	30.63	37.5
GSMUA_Achr6P31710_001	Banana	nucleus	37.68	37.41
GSMUA_Achr4P21600_001	Banana	nucleus	36.27	37.18
GSMUA_Achr1P01670_001	Banana	nucleus	38.73	37.04
GSMUA_Achr8P22800_001	Banana	nucleus	33.8	36.23
GSMUA_Achr2P10040_001	Banana	nucleus	36.97	35.96
GSMUA_Achr7P06950_001	Banana	nucleus	22.89	35.91
GSMUA_Achr9P15710_001	Banana	nucleus	38.38	34.94
KRH15480	Soybean	nucleus	36.62	34.1
KRH61469	Soybean	nucleus	34.51	33.79
GSMUA_Achr1P04360_001	Banana	nucleus	35.21	33.11
KRG88660	Soybean	nucleus	35.92	33.01
GSMUA_AchrUn_...	Banana	plastid	33.45	30.45

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr8G05100_001	EnsemblPlants:GSMUA_Achr8P05100_001	EnsemblPlants:GSMUA_Achr8T05100_001	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M0TMR3	PFAM:PF00046	PFAM:PF02183
ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF271	SMART:SM00340	SMART:SM00389
SUPFAM:SSF46689	UniParc:UPI000295994A	SEG:seg	:	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_732.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr8G05100_001]

Coordinates

chr8:+:3347034..3349337

Molecular Weight (calculated)

31894.9 Da

IEP (calculated)

9.170

GRAVY (calculated)

-0.858

Length

284 amino acids

Sequence
(BLAST)

001: MCTMSYRSFG YEWIKEKRRS QMRGGVKGKG KGKWKRKGSG EETERSMEKS REVELCDTGL SLELGIGGKS TTWSTDHRSM AQRQASLTLS LSDEGCGGEA
101: VQEAEAYKGC VEGGEEAEVE LATFRGARDD DNDGSGRKKL RLTKEQSAML EDRFKEHSNL NPKQKHALAK QLNLRPRQVE VWFQNRRART KLKQTEVDRE
201: LLKRCCESLT VENRRLRKEL QELKALKFTP PLYMQLPAAT LTMCPSCNRV GGSADSCNSG GAEEFAAAPP TPRFFNPFIH SATC

Best Arabidopsis Sequence Match ( AT4G37790.1 )
(BLAST)

001: MGLDDSCNTG LVLGLGLSPT PNNYNHAIKK SSSTVDHRFI RLDPSLTLSL SGESYKIKTG AGAGDQICRQ TSSHSGISSF SSGRVKRERE ISGGDGEEEA
101: EETTERVVCS RVSDDHDDEE GVSARKKLRL TKQQSALLED NFKLHSTLNP KQKQALARQL NLRPRQVEVW FQNRRARTKL KQTEVDCEFL KKCCETLTDE
201: NRRLQKELQD LKALKLSQPF YMHMPAATLT MCPSCERLGG GGVGGDTTAV DEETAKGAFS IVTKPRFYNP FTNPSAAC

Arabidopsis Description

HAT22Homeobox-leucine zipper protein HAT22 [Source:UniProtKB/Swiss-Prot;Acc:P46604]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.