Factsheet for VIT_18s0001g08410.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0732g00010.t01	Wine grape	nucleus	59.63	56.89
GSMUA_AchrUn_...	Banana	nucleus	54.81	53.62
GSMUA_Achr3P15190_001	Banana	nucleus	45.56	51.9
GSMUA_Achr8P26480_001	Banana	nucleus	50.0	48.04
GSMUA_Achr7P27530_001	Banana	nucleus	45.19	47.47
GSMUA_Achr4P01350_001	Banana	nucleus	44.81	47.45
GSMUA_Achr9P09800_001	Banana	nucleus	41.85	46.89
GSMUA_Achr6P30180_001	Banana	nucleus	43.33	46.43
GSMUA_Achr9P26300_001	Banana	nucleus	43.33	45.35
GSMUA_Achr8P05100_001	Banana	nucleus	47.04	44.72
GSMUA_Achr6P31710_001	Banana	nucleus	46.67	44.06
VIT_00s0299g00100.t01	Wine grape	nucleus	47.04	42.76
KRH15480	Soybean	nucleus	47.41	41.97
KRG88660	Soybean	nucleus	46.67	40.78
VIT_15s0021g01880.t01	Wine grape	nucleus	42.59	40.35
KRH61469	Soybean	nucleus	43.33	40.34
VIT_01s0011g04870.t01	Wine grape	nucleus	32.96	39.56
VIT_08s0007g06670.t01	Wine grape	nucleus	45.56	37.16
VIT_13s0156g00260.t01	Wine grape	nucleus	47.41	35.75

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100259040	wikigene:100259040	MapMan:15.5.3.1	ProteinID:CCB45713	ProteinID:CCB45713.1
ncoils:Coil	UniProt:F6H162	EMBL:FN595227	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	EntrezGene:LOC100259040
wikigene:LOC100259040	InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	ScanProsite:PS00027	PFscan:PS50071
PANTHER:PTHR24326	PANTHER:PTHR24326:SF284	SMART:SM00340	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI00015C74EB
ArrayExpress:VIT_18s0001g08410	EnsemblPlantsGene:VIT_18s0001g08410	EnsemblPlants:VIT_18s0001g08410.t01	RefSeq:XP_002283547	RefSeq:XP_002283547.1	SEG:seg

Description

No Description!

Coordinates

chr18:-:6882098..6883411

Molecular Weight (calculated)

30329.0 Da

IEP (calculated)

8.484

GRAVY (calculated)

-0.754

Length

270 amino acids

Sequence
(BLAST)

001: MGFEDVCCTG LGLGLGRQDR PQSRLQSDHQ EKKKKLCLKY DNSFPCLTLG PSEDTYQLAA KINDAGKGYG ESTDLHRQAS SLSAVSSFSN SSIKKERDLC
101: GEVEVEVEIE RVSSRASDED EEGNSRKKLR LTKEQAVILE DSFKQHSTLN PRQKQVLAKQ LNLRPRQVEV WFQNRRARTK LKQTEVDCEL LRKRCETLTD
201: ENQRLQKELQ ELKALKLATP LYMQLPAATL TMCPSCERIG SGGDASSKTS FTIGAKPRFC NPFTHPSPAC

Best Arabidopsis Sequence Match ( AT4G37790.1 )
(BLAST)

001: MGLDDSCNTG LVLGLGLSPT PNNYNHAIKK SSSTVDHRFI RLDPSLTLSL SGESYKIKTG AGAGDQICRQ TSSHSGISSF SSGRVKRERE ISGGDGEEEA
101: EETTERVVCS RVSDDHDDEE GVSARKKLRL TKQQSALLED NFKLHSTLNP KQKQALARQL NLRPRQVEVW FQNRRARTKL KQTEVDCEFL KKCCETLTDE
201: NRRLQKELQD LKALKLSQPF YMHMPAATLT MCPSCERLGG GGVGGDTTAV DEETAKGAFS IVTKPRFYNP FTNPSAAC

Arabidopsis Description

HAT22Homeobox-leucine zipper protein HAT22 [Source:UniProtKB/Swiss-Prot;Acc:P46604]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.