Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_00s0299g00100.t01 | |
| VIT_03s0038g04360.t01 | |
| VIT_15s0021g01880.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G37790.1 | VIT_03s0038g04360.t01 | AT1G22920.1 | 21798944 |
| AT4G37790.1 | VIT_00s0299g00100.t01 | AT4G16780.1 | 21798944 |
| AT4G37790.1 | VIT_15s0021g01880.t01 | AT5G47370.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH28314 | Soybean | nucleus | 69.26 | 69.26 |
| KRH77172 | Soybean | nucleus | 68.9 | 68.9 |
| Solyc02g091930.2.1 | Tomato | nucleus | 61.48 | 64.93 |
| PGSC0003DMT400055199 | Potato | nucleus | 60.42 | 64.29 |
| PGSC0003DMT400026968 | Potato | nucleus | 54.42 | 60.63 |
| KRH04366 | Soybean | nucleus | 66.78 | 60.58 |
| KRH58171 | Soybean | extracellular, nucleus | 64.31 | 59.67 |
| VIT_18s0001g08410.t01 | Wine grape | nucleus | 56.89 | 59.63 |
| Solyc02g063520.2.1 | Tomato | nucleus | 53.0 | 59.52 |
| CDY64220 | Canola | nucleus | 48.41 | 56.85 |
| AT4G37790.1 | Thale cress | nucleus | 55.83 | 56.83 |
| CDY67919 | Canola | nucleus | 56.54 | 56.74 |
| Bra011786.1-P | Field mustard | nucleus | 56.54 | 56.74 |
| AT2G22800.1 | Thale cress | nucleus | 54.77 | 56.57 |
| CDX69330 | Canola | nucleus | 56.18 | 56.38 |
| Bra017853.1-P | Field mustard | nucleus | 55.83 | 56.23 |
| Bra030200.1-P | Field mustard | nucleus | 55.12 | 55.52 |
| Bra010612.1-P | Field mustard | nucleus | 50.88 | 53.33 |
| CDY60301 | Canola | nucleus | 50.53 | 52.96 |
| VIT_00s0299g00100.t01 | Wine grape | nucleus | 48.06 | 45.79 |
| VIT_01s0011g04870.t01 | Wine grape | nucleus | 35.34 | 44.44 |
| VIT_15s0021g01880.t01 | Wine grape | nucleus | 42.76 | 42.46 |
| VIT_08s0007g06670.t01 | Wine grape | nucleus | 46.64 | 39.88 |
| VIT_13s0156g00260.t01 | Wine grape | nucleus | 49.47 | 39.11 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100267724 | wikigene:100267724 | MapMan:15.5.3.1 | UniProt:A5B626 | EMBL:AM447853 |
| ProteinID:CAN60988 | ProteinID:CAN60988.1 | ProteinID:CCB62916 | ProteinID:CCB62916.1 | ncoils:Coil | EMBL:FN596804 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS |
| InterPro:Homeobox_dom | InterPro:IPR001356 | EntrezGene:LOC100267724 | wikigene:LOC100267724 | InterPro:Leu_zip_homeo | PFAM:PF00046 |
| PFAM:PF02183 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF327 | SMART:SM00340 |
| SMART:SM00389 | SUPFAM:SSF46689 | TIGR:TC66964 | UniParc:UPI00015202E3 | ArrayExpress:VIT_00s0732g00010 | EnsemblPlantsGene:VIT_00s0732g00010 |
| EnsemblPlants:VIT_00s0732g00010.t01 | unigene:Vvi.8463 | RefSeq:XP_002271511 | RefSeq:XP_002271511.2 | SEG:seg | : |
Description
No Description!
Coordinates
chrUn:-:34773520..34774894
Molecular Weight (calculated)
31400.3 Da
IEP (calculated)
8.087
GRAVY (calculated)
-0.639
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFDDGCNTG LVLGLGFTAT AAALDQTPLK PCTTTDHDQR SKKTCLRFGP LAAAPTSFEP SLTLSLSGET YQVTGKMDMN KVCEEAAADL YRQPSPHSTV
101: SSFSNASVKR ERDLGSEEVE IERLSSRVSD EDEDGSNGRK KLRLTKEQSA LLEESFKQHS TLNPKQKQAL AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD
201: CEFLKKCCES LTDENRRLQK ELQELKALKL AQPLYMQLPA ATLTMCPSCE RIGGVTDGAS KSPFTMAPKP HFYNPFTNPS AAC
101: SSFSNASVKR ERDLGSEEVE IERLSSRVSD EDEDGSNGRK KLRLTKEQSA LLEESFKQHS TLNPKQKQAL AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD
201: CEFLKKCCES LTDENRRLQK ELQELKALKL AQPLYMQLPA ATLTMCPSCE RIGGVTDGAS KSPFTMAPKP HFYNPFTNPS AAC
001: MGLDDSCNTG LVLGLGLSPT PNNYNHAIKK SSSTVDHRFI RLDPSLTLSL SGESYKIKTG AGAGDQICRQ TSSHSGISSF SSGRVKRERE ISGGDGEEEA
101: EETTERVVCS RVSDDHDDEE GVSARKKLRL TKQQSALLED NFKLHSTLNP KQKQALARQL NLRPRQVEVW FQNRRARTKL KQTEVDCEFL KKCCETLTDE
201: NRRLQKELQD LKALKLSQPF YMHMPAATLT MCPSCERLGG GGVGGDTTAV DEETAKGAFS IVTKPRFYNP FTNPSAAC
101: EETTERVVCS RVSDDHDDEE GVSARKKLRL TKQQSALLED NFKLHSTLNP KQKQALARQL NLRPRQVEVW FQNRRARTKL KQTEVDCEFL KKCCETLTDE
201: NRRLQKELQD LKALKLSQPF YMHMPAATLT MCPSCERLGG GGVGGDTTAV DEETAKGAFS IVTKPRFYNP FTNPSAAC
Arabidopsis Description
HAT22Homeobox-leucine zipper protein HAT22 [Source:UniProtKB/Swiss-Prot;Acc:P46604]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.