Factsheet for PGSC0003DMT400055199

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400023896
PGSC0003DMT400062081
PGSC0003DMT400066838
PGSC0003DMT400069203

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37790.1	PGSC0003DMT400023896	AT1G22920.1	21798944
AT4G37790.1	PGSC0003DMT400069203	AT1G22920.1	21798944
AT4G37790.1	PGSC0003DMT400066838	AT3G60390.1	21798944
AT4G37790.1	PGSC0003DMT400062081	AT4G16780.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g091930.2.1	Tomato	nucleus	95.49	94.78
PGSC0003DMT400026968	Potato	nucleus	60.9	63.78
VIT_00s0732g00010.t01	Wine grape	nucleus	64.29	60.42
AT2G22800.1	Thale cress	nucleus	60.9	59.12
CDY64220	Canola	nucleus	52.26	57.68
Bra011786.1-P	Field mustard	nucleus	60.9	57.45
CDY67919	Canola	nucleus	60.9	57.45
CDX69330	Canola	nucleus	60.53	57.09
AT4G37790.1	Thale cress	nucleus	59.4	56.83
Bra017853.1-P	Field mustard	nucleus	59.77	56.58
Bra030200.1-P	Field mustard	nucleus	59.77	56.58
KRH28314	Soybean	nucleus	60.15	56.54
KRH77172	Soybean	nucleus	59.77	56.18
Bra010612.1-P	Field mustard	nucleus	56.39	55.56
CDY60301	Canola	nucleus	56.02	55.19
KRH04366	Soybean	nucleus	57.52	49.04
KRH58171	Soybean	extracellular, nucleus	55.64	48.52
PGSC0003DMT400012615	Potato	nucleus	44.74	44.74
PGSC0003DMT400096970	Potato	nucleus	31.58	42.42
PGSC0003DMT400067540	Potato	nucleus	43.61	42.18
PGSC0003DMT400032546	Potato	nucleus	43.61	41.43
PGSC0003DMT400078329	Potato	nucleus	32.33	40.0
PGSC0003DMT400066838	Potato	nucleus	42.86	39.58
PGSC0003DMT400062081	Potato	nucleus	42.86	37.38
PGSC0003DMT400060951	Potato	nucleus	44.74	33.9
PGSC0003DMT400016146	Potato	nucleus	47.37	33.78

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102581277	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:Leu_zip_homeo	UniProt:M1BXI9	PFAM:PF00046	PFAM:PF02183	EnsemblPlantsGene:PGSC0003DMG400021423	PGSC:PGSC0003DMG400021423
EnsemblPlants:PGSC0003DMT400055199	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF327	SMART:SM00340
SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0002964B0E	RefSeq:XP_006363789.1	SEG:seg	:

Description

Homeodomain leucine-zipper 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400021423]

Coordinates

chr2:-:42345193..42346544

Molecular Weight (calculated)

29697.2 Da

IEP (calculated)

8.472

GRAVY (calculated)

-0.668

Length

266 amino acids

Sequence
(BLAST)

001: MGFDDICNTG LVLGLGFSST ADYKSKKITT PLVGKGPSLG LEPSLTLSLI SGDRTYEQQP IKISKDHQSA DLYRQDSAAS SYSNASVKRE RDVGSEETTT
101: EVERVSSRVI SDEDDDGSNA RKKLRLTKAQ SALLEESFKI HSTLNPKQKQ DLARELNLRP RQVEVWFQNR RARTKLKQTE VDCEFLKKCC ETLTEENRRL
201: HKELHELKAL KIAQPLYMQL PAATLTMCPS CERIGGGVGE NPSKNAFTIA QKPHFYSPFN NPSAAC

Best Arabidopsis Sequence Match ( AT4G37790.1 )
(BLAST)

001: MGLDDSCNTG LVLGLGLSPT PNNYNHAIKK SSSTVDHRFI RLDPSLTLSL SGESYKIKTG AGAGDQICRQ TSSHSGISSF SSGRVKRERE ISGGDGEEEA
101: EETTERVVCS RVSDDHDDEE GVSARKKLRL TKQQSALLED NFKLHSTLNP KQKQALARQL NLRPRQVEVW FQNRRARTKL KQTEVDCEFL KKCCETLTDE
201: NRRLQKELQD LKALKLSQPF YMHMPAATLT MCPSCERLGG GGVGGDTTAV DEETAKGAFS IVTKPRFYNP FTNPSAAC

Arabidopsis Description

HAT22Homeobox-leucine zipper protein HAT22 [Source:UniProtKB/Swiss-Prot;Acc:P46604]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.