Factsheet for PGSC0003DMT400067540

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g078300.2.1	Tomato	nucleus	98.55	96.79
PGSC0003DMT400032546	Potato	nucleus	71.64	70.36
GSMUA_Achr11P...	Banana	nucleus	53.82	59.92
PGSC0003DMT400062081	Potato	nucleus	66.18	59.67
GSMUA_Achr5P13530_001	Banana	nucleus	60.36	59.5
GSMUA_Achr7P06950_001	Banana	nucleus	38.91	59.12
GSMUA_Achr2P10040_001	Banana	nucleus	60.0	56.51
GSMUA_Achr4P21600_001	Banana	nucleus	56.73	56.32
Zm00001d002754_P001	Maize	nucleus	45.82	55.51
GSMUA_Achr1P01670_001	Banana	nucleus	58.91	54.55
EES12613	Sorghum	nucleus	45.82	54.08
HORVU2Hr1G097940.2	Barley	nucleus	44.0	53.78
TraesCS2A01G415900.1	Wheat	nucleus	44.0	53.3
PGSC0003DMT400066838	Potato	nucleus	55.64	53.12
TraesCS2B01G434900.1	Wheat	nucleus	44.0	52.61
TraesCS2D01G412900.1	Wheat	nucleus	44.0	52.61
GSMUA_Achr1P04360_001	Banana	nucleus	57.45	52.32
Os04t0548700-01	Rice	nucleus	45.09	50.2
PGSC0003DMT400055199	Potato	nucleus	42.18	43.61
PGSC0003DMT400026968	Potato	nucleus	40.0	43.31
PGSC0003DMT400078329	Potato	nucleus	33.82	43.26
GSMUA_AchrUn_...	Banana	plastid	48.36	42.63
TraesCS1D01G220900.1	Wheat	nucleus	49.82	42.02
Os10t0561800-01	Rice	nucleus	46.91	41.48
TraesCS1B01G232700.2	Wheat	nucleus	49.09	41.28
TraesCS1A01G219200.1	Wheat	nucleus	49.09	41.03
Zm00001d029934_P001	Maize	nucleus	47.27	40.5
PGSC0003DMT400096970	Potato	nucleus	28.0	38.89
EER94486	Sorghum	nucleus	48.73	38.73
PGSC0003DMT400012615	Potato	nucleus	37.45	38.72
HORVU1Hr1G055930.1	Barley	nucleus	49.09	37.4
PGSC0003DMT400016146	Potato	nucleus	48.36	35.66
PGSC0003DMT400060951	Potato	nucleus	45.45	35.61

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:HD-ZIP_N	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M1CHH0	PFAM:PF00046	PFAM:PF02183	PFAM:PF04618
EnsemblPlantsGene:PGSC0003DMG400026264	PGSC:PGSC0003DMG400026264	EnsemblPlants:PGSC0003DMT400067540	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071
PANTHER:PTHR24326	PANTHER:PTHR24326:SF210	SMART:SM00340	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0002953FDF
SEG:seg	:	:	:	:	:

Description

Homeobox-leucine zipper protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026264]

Coordinates

chr8:-:51410100..51412552

Molecular Weight (calculated)

31224.7 Da

IEP (calculated)

8.048

GRAVY (calculated)

-0.950

Length

275 amino acids

Sequence
(BLAST)

001: MVEKEDLGLS LSLSFPDNNN KKNTQLNLSP FNLIQKTSWT DSLFPSSDRN IETCRVETRT FLKGIDVNRL PATGEADEEA GVSSPNSTIS SVSGNKRTER
101: EANNCDQEEH EMERGSDEED GETSRKKLRL SKDQSAILEE SFKEHNTLNP KQKLALAKRL GLRPRQVEVW FQNRRARTKL KQTEVDCEFL KRCCENLTEE
201: NRRLQKEVQE LRALKLSPQF YMQMTPPTTL TMCPSCERVA GPPSSSSGPT STPMGQAQPR PRPFNLWANA LHPRS

Best Arabidopsis Sequence Match ( AT4G16780.1 )
(BLAST)

001: MMFEKDDLGL SLGLNFPKKQ INLKSNPSVS VTPSSSSFGL FRRSSWNESF TSSVPNSDSS QKETRTFIRG IDVNRPPSTA EYGDEDAGVS SPNSTVSSST
101: GKRSEREEDT DPQGSRGISD DEDGDNSRKK LRLSKDQSAI LEETFKDHST LNPKQKQALA KQLGLRARQV EVWFQNRRAR TKLKQTEVDC EFLRRCCENL
201: TEENRRLQKE VTELRALKLS PQFYMHMSPP TTLTMCPSCE HVSVPPPQPQ AATSAHHRSL PVNAWAPATR ISHGLTFDAL RPRS

Arabidopsis Description

HAT4Homeobox-leucine zipper protein HAT4 [Source:UniProtKB/Swiss-Prot;Acc:Q05466]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.