CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER94486
EER98990
EER99208
EES05709
EES12613
KXG25294
KXG27287
KXG38894
OQU80770

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G16780.1	KXG27287	AT1G22920.1	21798944
AT4G16780.1	KXG27287	AT1G71230.1	21798944
AT4G16780.1	EER94486	AT4G16780.1	21798944
AT4G16780.1	EES12613	AT4G16780.1	21798944
AT4G16780.1	EES05709	AT4G17680.1	21798944
AT4G16780.1	KXG38894	AT4G17680.1	21798944
AT4G16780.1	EER98990	AT5G06710.1	21798944
AT4G16780.1	KXG25294	AT5G06710.1	21798944
AT4G16780.1	EER99208	AT5G51910.1	21798944
AT4G16780.1	OQU80770	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002754_P001	Maize	nucleus	87.98	90.31
TraesCS2A01G415900.1	Wheat	nucleus	81.97	84.14
TraesCS2D01G412900.1	Wheat	nucleus	82.4	83.48
HORVU2Hr1G097940.2	Barley	nucleus	78.11	80.89
TraesCS2B01G434900.1	Wheat	nucleus	79.83	80.87
Os04t0548700-01	Rice	nucleus	83.69	78.95
KRH77331	Soybean	nucleus	54.94	47.76
PGSC0003DMT400067540	Potato	nucleus	54.08	45.82
Solyc08g078300.2.1	Tomato	nucleus	54.08	45.0
Solyc08g007270.2.1	Tomato	nucleus	51.93	44.0
KRH28155	Soybean	nucleus	53.22	43.51
EER91838	Sorghum	nucleus	47.21	43.31
PGSC0003DMT400032546	Potato	nucleus	51.5	42.86
KRH57467	Soybean	nucleus	54.51	42.62
GSMUA_Achr4P21600_001	Banana	nucleus	49.79	41.88
KRH04179	Soybean	nucleus	53.65	41.81
VIT_00s0299g00100.t01	Wine grape	nucleus	53.22	41.75
GSMUA_AchrUn_...	Banana	plastid	54.51	40.71
Bra040094.1-P	Field mustard	nucleus	49.79	40.7
AT4G16780.1	Thale cress	nucleus	48.93	40.14
Solyc06g060830.2.1	Tomato	nucleus	49.79	38.93
EER94486	Sorghum	nucleus	57.51	38.73
EES03343	Sorghum	nucleus	37.77	38.26
PGSC0003DMT400062081	Potato	nucleus	49.79	38.03
GSMUA_Achr1P04360_001	Banana	nucleus	47.21	36.42
EER87812	Sorghum	nucleus	43.35	35.44
GSMUA_Achr7P06950_001	Banana	nucleus	27.04	34.81
EER92607	Sorghum	nucleus	44.64	34.78
EER90307	Sorghum	nucleus	34.33	33.9
EER98990	Sorghum	nucleus	52.79	33.33
EER87813	Sorghum	plastid	44.64	32.7
KXG25294	Sorghum	nucleus	51.07	31.15
OQU85171	Sorghum	nucleus	40.34	29.1
EES04526	Sorghum	nucleus	30.47	27.41

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EntrezGene:8083360	UniProt:C5YDG3	ncoils:Coil	EnsemblPlants:EES12613
ProteinID:EES12613	ProteinID:EES12613.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo
PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326
PANTHER:PTHR24326:SF199	SMART:SM00340	SMART:SM00389	EnsemblPlantsGene:SORBI_3006G169200	SUPFAM:SSF46689	unigene:Sbi.11595
UniParc:UPI0001A87589	RefSeq:XP_002448285.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:52620124..52622122

Molecular Weight (calculated)

25758.0 Da

IEP (calculated)

8.918

GRAVY (calculated)

-0.585

Length

233 amino acids

Sequence
(BLAST)

001: MMERVEDLGL SLSLSSSLAS PRTHHVATML LRAPPEKRFL EMPLLLPAKR SELATGEEGL RGGGSDEEDG GCGIDGSRKK LRLSKDQSAV LEDSFREHPT
101: LNPRQKAALA QQLGLRPRQV EVWFQNRRAR TKLKQTEVDC EYLKRCCETL TEENRRLHKE VQELRALKLV SPHLYMHMPP PTTLTMCPSC ERVSSSNASN
201: ANSAAADRKA GAGVADGGAI VCHRPIAVRP QQS

Best Arabidopsis Sequence Match ( AT3G60390.1 )
(BLAST)

001: MSERDDGLGL SLSLSLGFNQ KDPSSRLNPM PLASYASSSH MQHMQQSNYN HPQKIQNTWI NMFQSSERNS DMRSFLRGID VNRAPSTVVV DVEDEGAGVS
101: SPNSTVSSVM SGKKSERELM AAAGAVGGGR VEDNEIERAS CSLGGGSDDE DGSGNGDDSS RKKLRLSKEQ ALVLEETFKE HSTLNPKQKM ALAKQLNLRT
201: RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ENLTDENRRL QKEVSELRAL KLSPHLYMHM KPPTTLTMCP SCERVAVTSS SSSVAPPVMN SSSPMGPMSP
301: WAAMPLRQRP AAGSH

Arabidopsis Description

HAT3Homeobox-leucine zipper protein HAT3 [Source:UniProtKB/Swiss-Prot;Acc:P46602]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.