CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87896
EER99208
EER99751
EES00059
EES01406
EES02372
EES06098
EES07800
EES18201
EES19859
KXG19087
KXG21693
KXG28874
KXG39270
OQU80770
OQU89582
OQU90254

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51910.1	EES02372	AT2G03500.1	21798944
AT5G51910.1	EES00059	AT2G30050.1	21798944
AT5G51910.1	OQU89582	AT2G30050.1	21798944
AT5G51910.1	OQU90254	AT3G16980.1	21798944
AT5G51910.1	KXG21693	AT3G20420.1	21798944
AT5G51910.1	EES01406	AT3G29160.1	21798944
AT5G51910.1	EES19859	AT3G29160.1	21798944
AT5G51910.1	EER99751	AT3G47640.1	21798944
AT5G51910.1	KXG28874	AT3G47640.1	21798944
AT5G51910.1	KXG39270	AT3G47640.1	21798944
AT5G51910.1	EES18201	AT4G04800.1	21798944
AT5G51910.1	EER87896	AT4G16760.1	21798944
AT5G51910.1	KXG19087	AT4G16760.1	21798944
AT5G51910.1	EES06098	AT5G07840.1	21798944
AT5G51910.1	EES07800	AT5G08330.1	21798944
AT5G51910.1	EER99208	AT5G51910.1	21798944
AT5G51910.1	OQU80770	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006165_P001	Maize	nucleus	83.13	82.12
TraesCS5B01G310000.1	Wheat	cytosol, nucleus, peroxisome	60.12	57.82
TraesCS5D01G316300.1	Wheat	nucleus	58.9	57.48
TraesCS5A01G309300.1	Wheat	cytosol, nucleus, peroxisome	58.59	56.51
Os09t0521300-00	Rice	nucleus	54.6	46.72
HORVU5Hr1G080210.1	Barley	cytosol	31.6	37.73
VIT_16s0022g02480.t01	Wine grape	nucleus	16.26	31.36
EES10469	Sorghum	plastid	16.26	29.94
EES11145	Sorghum	plastid	18.4	28.99
EES05476	Sorghum	plastid	19.02	27.93
OQU80770	Sorghum	nucleus	30.67	27.86
EES07800	Sorghum	plastid	20.55	27.57
GSMUA_Achr3P12320_001	Banana	cytosol	16.87	27.23
CDY27099	Canola	nucleus	22.39	26.16
AT5G51910.1	Thale cress	nucleus	22.7	25.26
CDX91612	Canola	nucleus	22.09	25.0
Bra022568.1-P	Field mustard	cytosol	22.7	24.92
KRH35393	Soybean	nucleus	23.31	24.44
CDX95656	Canola	nucleus	21.47	23.89
KRG91429	Soybean	nucleus	23.62	23.62
CDY53888	Canola	nucleus	21.78	22.83
Bra000395.1-P	Field mustard	nucleus	21.47	22.51
VIT_15s0048g01150.t01	Wine grape	nucleus	23.31	22.42
PGSC0003DMT400088049	Potato	cytosol	18.4	22.22
Solyc03g006800.1.1	Tomato	nucleus	21.78	21.78
PGSC0003DMT400094424	Potato	cytosol	16.26	21.63
EES07255	Sorghum	nucleus	26.07	21.36
Bra004929.1-P	Field mustard	nucleus	21.17	21.3
CDX74756	Canola	nucleus	21.17	21.23
CDY18910	Canola	nucleus	20.86	20.92
KRH65181	Soybean	nucleus	21.47	20.83
KRH48289	Soybean	nucleus	21.17	20.6
EER88112	Sorghum	nucleus	24.54	20.3
KRH03994	Soybean	nucleus	21.17	20.29
PGSC0003DMT400062327	Potato	nucleus	22.39	19.95
AT2G45680.1	Thale cress	cytosol	21.78	19.94
EES01992	Sorghum	nucleus	19.33	19.38
KRH57263	Soybean	nucleus	20.55	19.36
Solyc08g080150.1.1	Tomato	nucleus	20.25	17.84
PGSC0003DMT400058534	Potato	nucleus	19.94	17.38
VIT_02s0025g04590.t01	Wine grape	nucleus	21.47	17.03

Protein Annotations

MapMan:15.5.19	EntrezGene:8059025	UniProt:C5X621	EnsemblPlants:EER99208	ProteinID:EER99208	ProteinID:EER99208.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	PFAM:PF03634	PFscan:PS51369
PANTHER:PTHR31072	PANTHER:PTHR31072:SF19	EnsemblPlantsGene:SORBI_3002G268600	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0001A83CF2
RefSeq:XP_002462687.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:65259814..65260794

Molecular Weight (calculated)

33539.2 Da

IEP (calculated)

4.909

GRAVY (calculated)

-0.436

Length

326 amino acids

Sequence
(BLAST)

001: MESRAAGRGE EGTKALYLGN GSAAGAVAVD AMVSMEAGGS GLPKPEPVSV EFLSGGGLQV SNPRPPPRYR DRHTKVEGRG RRIRMAAACS DRVSRLTREL
101: GHKSDGETIR WLLQQSEPAI IAATGTGTVP AIAVTGADGV LRLPAEPAAA DGAGGEQQQQ QQEPDAKRRR KLQPTRGAGA GPGPAAPAPA AAYYPVVADP
201: LLQANGGGAI SVSSGLAPAS APAPVGAIPF IAIPAPSPGA TGERKQMIPP PAAMWMVPQQ AGAANQPTHY WAFPTNPEFL NFQQQAVYDG GQLVGDGESQ
301: GQQTGGYQPW EGEDEEIAVT DSSSEE

Best Arabidopsis Sequence Match ( AT2G45680.1 )
(BLAST)

001: MATIQKLEEV AGKDQTLRAV DLTIINGVRN VETSRPFQVN PTVSLEPKAE PVMPSFSMSL APPSSTGPPL KRASTKDRHT KVEGRGRRIR MPATCAARIF
101: QLTRELGHKS DGETIRWLLE NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD AVSASSGLAP IATTTTIQPP
201: QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR
301: ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH

Arabidopsis Description

TCP9Transcription factor TCP9 [Source:UniProtKB/Swiss-Prot;Acc:O64647]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.