CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017350_P001	Maize	plastid	81.98	82.73
Zm00001d051216_P001	Maize	plastid	80.63	82.11
TraesCS6A01G233800.1	Wheat	plastid	68.92	75.37
TraesCS6D01G216100.1	Wheat	plastid	69.37	74.76
TraesCS6B01G262600.1	Wheat	plastid	66.67	74.37
Os02t0635800-01	Rice	nucleus	68.47	72.04
EES11145	Sorghum	plastid	59.91	64.25
HORVU6Hr1G059930.1	Barley	plastid	62.61	60.17
EES07800	Sorghum	plastid	46.85	42.8
EES10469	Sorghum	plastid	25.68	32.2
GSMUA_Achr2P10690_001	Banana	cytosol, mitochondrion, nucleus, plastid	24.32	25.59
EER99208	Sorghum	nucleus	27.93	19.02
EER88112	Sorghum	nucleus	33.33	18.78
EES01992	Sorghum	nucleus	27.03	18.46
OQU80770	Sorghum	nucleus	29.73	18.38
EES07255	Sorghum	nucleus	31.08	17.34

Protein Annotations

MapMan:15.5.19	MapMan:27.1.5.3	EntrezGene:8074795	UniProt:C5XY73	EnsemblPlants:EES05476	ProteinID:EES05476
ProteinID:EES05476.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	PFAM:PF03634
PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF31	EnsemblPlantsGene:SORBI_3004G225400	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP
UniParc:UPI0001A8543F	RefSeq:XP_002452500.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:57561690..57562358

Molecular Weight (calculated)

23114.4 Da

IEP (calculated)

10.441

GRAVY (calculated)

-0.221

Length

222 amino acids

Sequence
(BLAST)

001: MATTRDVSTA AAAAAAMFHV YQPMPMPMPS TAAAADAGAM VPAPATKQVK REGGGGKDRH SKVNGRGRRV RMPIVCAARV FQLTRELGLK SDGQTIEWLL
101: RQAEPSIMAA TGSGTTPAVF VSSSAPSTSS SSSHYHQATA TVLGKRQREE GDAAMGTAPA SAFWAALPAA AAPRTTEAWG FSPLEAQAAA AYVPMAQAQH
201: HHHLNLLAAL SGAARRAEEE TR

Best Arabidopsis Sequence Match ( AT5G23280.1 )
(BLAST)

001: MSINNNNNNN NNNNDGLMIS SNGALIEQQP SVVVKKPPAK DRHSKVDGRG RRIRMPIICA ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP
101: ASFSTASVSI RGATNSTSLD HKPTSLLGGT SPFILGKRVR ADEDSNNSHN HSSVGKDETF TTTPAGFWAV PARPDFGQVW SFAGAPQEMF LQQQHHHQQP
201: LFVHQQQQQQ AAMGEASAAR VGNYLPGHLN LLASLSGGSP GSDRREEDPR

Arabidopsis Description

TCP7Transcription factor TCP7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMX2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.