CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011985_P001	Maize	nucleus	90.15	93.02
Zm00001d042305_P001	Maize	cytosol, mitochondrion, nucleus	89.85	90.12
Os01t0924400-01	Rice	nucleus	71.38	73.19
TraesCS3D01G428700.1	Wheat	nucleus	75.08	72.62
TraesCS3A01G436100.1	Wheat	nucleus, plastid	74.77	71.26
TraesCS3B01G470700.1	Wheat	nucleus	75.08	69.91
GSMUA_AchrUn_...	Banana	nucleus	39.08	55.95
GSMUA_Achr11P...	Banana	nucleus	40.0	52.21
HORVU3Hr1G095400.2	Barley	golgi, plasma membrane	73.54	51.4
GSMUA_Achr11P...	Banana	nucleus	42.15	47.74
GSMUA_Achr1P27500_001	Banana	nucleus	40.31	45.33
PGSC0003DMT400052203	Potato	nucleus	32.0	44.83
GSMUA_Achr7P23010_001	Banana	nucleus	40.92	43.89
VIT_14s0068g01690.t01	Wine grape	nucleus	39.69	43.58
GSMUA_Achr7P02680_001	Banana	nucleus	39.38	43.54
CDY20065	Canola	cytosol	36.0	43.49
GSMUA_Achr10P...	Banana	nucleus	31.38	43.4
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	28.0	42.92
AT3G27010.1	Thale cress	nucleus	40.62	42.04
GSMUA_Achr5P25030_001	Banana	nucleus	36.92	41.81
Bra039096.1-P	Field mustard	nucleus	35.69	41.73
PGSC0003DMT400090661	Potato	nucleus	35.69	41.58
Solyc02g068200.1.1	Tomato	nucleus	34.77	41.54
CDY00171	Canola	nucleus	34.77	40.94
Bra025244.1-P	Field mustard	nucleus	38.46	40.72
CDY13675	Canola	nucleus	38.46	40.19
KRG94577	Soybean	nucleus	40.31	39.7
KRH06910	Soybean	nucleus	41.85	39.42
CDY52403	Canola	nucleus	36.92	39.34
GSMUA_Achr6P07930_001	Banana	cytosol	24.0	32.91
EES07800	Sorghum	plastid	22.46	30.04
EES10469	Sorghum	plastid	16.31	29.94
EES11145	Sorghum	plastid	18.77	29.47
EES05476	Sorghum	plastid	18.46	27.03
EES07255	Sorghum	nucleus	28.31	23.12
EER88112	Sorghum	nucleus	28.0	23.1
OQU80770	Sorghum	nucleus	22.15	20.06
EER99208	Sorghum	nucleus	19.38	19.33

Protein Annotations

MapMan:15.5.19	MapMan:27.1.5.2	EntrezGene:8059375	UniProt:C5XGD6	EnsemblPlants:EES01992	ProteinID:EES01992
ProteinID:EES01992.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	PFAM:PF03634
PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF4	EnsemblPlantsGene:SORBI_3003G408400	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP
UniParc:UPI00018C81FB	RefSeq:XP_002456872.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:71606005..71607642

Molecular Weight (calculated)

34233.8 Da

IEP (calculated)

6.859

GRAVY (calculated)

-0.722

Length

325 amino acids

Sequence
(BLAST)

001: MDPKFPTPPP LNKTEPTTAT TTTTSTAQQQ QQQLDPKDYQ QPAQQHHLQI QIHQPPPQQQ QQQDGGKEQQ LQVVAQPGER RQQALAPKRS SNKDRHTKVD
101: GRGRRIRMPA LCAARIFQLT RELGHKSDGE TVQWLLQQAE PAIVAATGTG TIPASALASV APSLPSPTSG LARPHHHHHP HHMWAPSAAS AGFSSPSFLN
201: SAAAGTGDAA GIGGLMQRMG IPAGLELPGG GAAGGTLGAG GHIGFAPMFA GHAAAMPGLE LGLSQDGHIG VLAAQSISQF YHQVGAAGGS GQMQHPHGHQ
301: HHHHQQQEDG EDDREDGESD DESGQ

Best Arabidopsis Sequence Match ( AT3G27010.1 )
(BLAST)

001: MDPKNLNRHQ VPNFLNPPPP PRNQGLVDDD AASAVVSDEN RKPTTEIKDF QIVVSASDKE PNKKSQNQNQ LGPKRSSNKD RHTKVEGRGR RIRMPALCAA
101: RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGSGTIPA SALASSAATS NHHQGGSLTA GLMISHDLDG GSSSSGRPLN WGIGGGEGVS RSSLPTGLWP
201: NVAGFGSGVP TTGLMSEGAG YRIGFPGFDF PGVGHMSFAS ILGGNHNQMP GLELGLSQEG NVGVLNPQSF TQIYQQMGQA QAQAQGRVLH HMHHNHEEHQ
301: QESGEKDDSQ GSGR

Arabidopsis Description

TCP20TCP20 [Source:UniProtKB/TrEMBL;Acc:A0A178VAT1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.