Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025244.1-P | Field mustard | nucleus | 98.71 | 100.0 |
| CDY52403 | Canola | nucleus | 91.64 | 93.44 |
| AT3G27010.1 | Thale cress | nucleus | 85.53 | 84.71 |
| CDY20065 | Canola | cytosol | 69.77 | 80.67 |
| CDY00171 | Canola | nucleus | 70.42 | 79.35 |
| VIT_14s0068g01690.t01 | Wine grape | nucleus | 57.56 | 60.47 |
| PGSC0003DMT400052203 | Potato | nucleus | 44.69 | 59.91 |
| PGSC0003DMT400090661 | Potato | nucleus | 49.84 | 55.56 |
| Solyc02g068200.1.1 | Tomato | nucleus | 47.91 | 54.78 |
| KRG94577 | Soybean | nucleus | 56.59 | 53.33 |
| GSMUA_AchrUn_... | Banana | nucleus | 37.94 | 51.98 |
| KRH06910 | Soybean | nucleus | 57.23 | 51.59 |
| GSMUA_Achr11P... | Banana | nucleus | 37.62 | 46.99 |
| Zm00001d011985_P001 | Maize | nucleus | 40.19 | 39.68 |
| Os01t0924400-01 | Rice | nucleus | 39.55 | 38.8 |
| CDY36943 | Canola | nucleus | 23.47 | 38.62 |
| EES01992 | Sorghum | nucleus | 40.19 | 38.46 |
| CDY60249 | Canola | cytosol | 25.72 | 38.46 |
| Zm00001d042305_P001 | Maize | cytosol, mitochondrion, nucleus | 39.23 | 37.65 |
| CDY40752 | Canola | cytosol | 20.9 | 36.72 |
| CDX78335 | Canola | nucleus | 20.58 | 36.36 |
| TraesCS3D01G428700.1 | Wheat | nucleus | 38.91 | 36.01 |
| CDY48964 | Canola | nucleus | 25.4 | 35.91 |
| CDX81094 | Canola | nucleus | 20.58 | 35.56 |
| TraesCS3A01G436100.1 | Wheat | nucleus, plastid | 38.91 | 35.48 |
| TraesCS3B01G470700.1 | Wheat | nucleus | 38.91 | 34.67 |
| CDY24170 | Canola | nucleus | 26.37 | 33.74 |
| CDY16842 | Canola | nucleus | 23.15 | 33.49 |
| CDX87179 | Canola | nucleus | 23.15 | 33.49 |
| CDY44770 | Canola | cytosol | 23.15 | 32.0 |
| CDY46951 | Canola | nucleus | 22.83 | 30.87 |
| CDY21536 | Canola | nucleus | 22.83 | 30.08 |
| CDY40799 | Canola | nucleus | 22.19 | 30.0 |
| CDY45760 | Canola | nucleus | 23.15 | 29.75 |
| CDY28576 | Canola | nucleus | 29.58 | 28.93 |
| CDX88010 | Canola | nucleus | 23.47 | 28.85 |
| CDY01754 | Canola | nucleus, plastid | 29.9 | 28.79 |
| CDY68276 | Canola | nucleus, plastid | 29.58 | 28.66 |
| CDY27099 | Canola | nucleus | 24.44 | 27.24 |
| CDY28577 | Canola | cytosol | 20.9 | 26.75 |
| CDX91612 | Canola | nucleus | 24.44 | 26.39 |
| HORVU3Hr1G095400.2 | Barley | golgi, plasma membrane | 38.91 | 26.02 |
| CDX95656 | Canola | nucleus | 23.47 | 24.91 |
| CDY53888 | Canola | nucleus | 24.12 | 24.12 |
| CDX74756 | Canola | nucleus | 24.44 | 23.38 |
| CDY18910 | Canola | nucleus | 24.12 | 23.08 |
| CDY71135 | Canola | nucleus | 28.3 | 22.45 |
| CDY39914 | Canola | nucleus, plastid | 27.65 | 21.83 |
| CDX72856 | Canola | nucleus | 23.15 | 21.56 |
| CDX96370 | Canola | nucleus | 23.15 | 21.49 |
| CDX82193 | Canola | nucleus, plastid | 22.51 | 19.89 |
| CDY03666 | Canola | nucleus, plastid | 22.51 | 19.72 |
Protein Annotations
| MapMan:15.5.19 | MapMan:27.1.5.2 | UniProt:A0A078FGX5 | EnsemblPlants:CDY13675 | ProteinID:CDY13675 | ProteinID:CDY13675.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00078098001 | InterPro:IPR017887 | PFAM:PF03634 |
| PFscan:PS51369 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF4 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI0001B3427B |
| SEG:seg | : | : | : | : | : |
Description
BnaA06g32480DBnaA06g32480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FGX5]
Coordinates
chrLK032037:-:550103..551038
Molecular Weight (calculated)
32847.2 Da
IEP (calculated)
7.954
GRAVY (calculated)
-0.722
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPKNPNRHQ VPNFLNPPPR NQSLGDASKD DNHHSKPAEV KDFQIVVASD KEPNKKPQQQ QNQLGPKRSS NKDRHIKVEG RGRRIRMPAL CAARIFQLTR
101: ELGHKSDGET IQWLLQQAEP SIIAATGSGT IPASALASAA AAVSSHHLQG GGSLTAGLMI SHELDGGSSS GRPNWGVGGG DGGSRSSLPT GLWPNVAGFG
201: AGVQTMSDGG GYRIGFPGFD YPGGAMSFAS ILGGGSNNQM PGLELGLAQE GNVGVLNPQS FAQIYQQQMS QAQAQAQAQG RVLHHTLQHN PSHEEHQQES
301: GEKDDSQGSG R
101: ELGHKSDGET IQWLLQQAEP SIIAATGSGT IPASALASAA AAVSSHHLQG GGSLTAGLMI SHELDGGSSS GRPNWGVGGG DGGSRSSLPT GLWPNVAGFG
201: AGVQTMSDGG GYRIGFPGFD YPGGAMSFAS ILGGGSNNQM PGLELGLAQE GNVGVLNPQS FAQIYQQQMS QAQAQAQAQG RVLHHTLQHN PSHEEHQQES
301: GEKDDSQGSG R
001: MDPKNLNRHQ VPNFLNPPPP PRNQGLVDDD AASAVVSDEN RKPTTEIKDF QIVVSASDKE PNKKSQNQNQ LGPKRSSNKD RHTKVEGRGR RIRMPALCAA
101: RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGSGTIPA SALASSAATS NHHQGGSLTA GLMISHDLDG GSSSSGRPLN WGIGGGEGVS RSSLPTGLWP
201: NVAGFGSGVP TTGLMSEGAG YRIGFPGFDF PGVGHMSFAS ILGGNHNQMP GLELGLSQEG NVGVLNPQSF TQIYQQMGQA QAQAQGRVLH HMHHNHEEHQ
301: QESGEKDDSQ GSGR
101: RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGSGTIPA SALASSAATS NHHQGGSLTA GLMISHDLDG GSSSSGRPLN WGIGGGEGVS RSSLPTGLWP
201: NVAGFGSGVP TTGLMSEGAG YRIGFPGFDF PGVGHMSFAS ILGGNHNQMP GLELGLSQEG NVGVLNPQSF TQIYQQMGQA QAQAQGRVLH HMHHNHEEHQ
301: QESGEKDDSQ GSGR
Arabidopsis Description
TCP20TCP20 [Source:UniProtKB/TrEMBL;Acc:A0A178VAT1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.