Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007875.1-P | Field mustard | cytosol | 98.77 | 97.56 |
| CDY28576 | Canola | nucleus | 100.0 | 76.42 |
| CDY68276 | Canola | nucleus, plastid | 88.89 | 67.29 |
| CDY01754 | Canola | nucleus, plastid | 88.89 | 66.87 |
| AT1G69690.1 | Thale cress | nucleus, plastid | 88.48 | 66.15 |
| VIT_01s0026g02200.t01 | Wine grape | nucleus | 50.62 | 34.84 |
| CDY36943 | Canola | nucleus | 26.34 | 33.86 |
| KRH45889 | Soybean | nucleus | 37.04 | 31.47 |
| CDY40752 | Canola | cytosol | 22.63 | 31.07 |
| KRG99108 | Soybean | nucleus | 33.33 | 29.67 |
| CDX78335 | Canola | nucleus | 21.4 | 29.55 |
| CDX87179 | Canola | nucleus | 25.93 | 29.3 |
| CDY16842 | Canola | nucleus | 25.93 | 29.3 |
| CDX81094 | Canola | nucleus | 21.4 | 28.89 |
| CDY44770 | Canola | cytosol | 25.93 | 28.0 |
| CDY24170 | Canola | nucleus | 26.34 | 26.34 |
| CDY21536 | Canola | nucleus | 25.51 | 26.27 |
| CDY46951 | Canola | nucleus | 24.28 | 25.65 |
| CDY45760 | Canola | nucleus | 25.51 | 25.62 |
| CDY60249 | Canola | cytosol | 21.81 | 25.48 |
| CDX88010 | Canola | nucleus | 26.34 | 25.3 |
| PGSC0003DMT400008728 | Potato | nucleus | 37.86 | 24.8 |
| CDY40799 | Canola | nucleus | 23.05 | 24.35 |
| Solyc05g007420.1.1 | Tomato | nucleus | 38.27 | 24.28 |
| CDY48964 | Canola | nucleus | 21.4 | 23.64 |
| CDY20065 | Canola | cytosol | 25.1 | 22.68 |
| CDX72856 | Canola | nucleus | 30.45 | 22.16 |
| CDX96370 | Canola | nucleus | 30.04 | 21.79 |
| CDY71135 | Canola | nucleus | 34.98 | 21.68 |
| CDY39914 | Canola | nucleus, plastid | 34.98 | 21.57 |
| CDY13675 | Canola | nucleus | 26.75 | 20.9 |
| CDY27099 | Canola | nucleus | 23.87 | 20.79 |
| CDY52403 | Canola | nucleus | 25.93 | 20.66 |
| CDY00171 | Canola | nucleus | 23.46 | 20.65 |
| CDX91612 | Canola | nucleus | 23.87 | 20.14 |
| CDX82193 | Canola | nucleus, plastid | 28.81 | 19.89 |
| CDX95656 | Canola | nucleus | 23.87 | 19.8 |
| CDY03666 | Canola | nucleus, plastid | 28.81 | 19.72 |
| CDY53888 | Canola | nucleus | 23.87 | 18.65 |
| CDX74756 | Canola | nucleus | 23.87 | 17.85 |
| CDY18910 | Canola | nucleus | 23.46 | 17.54 |
Protein Annotations
| MapMan:15.5.19 | UniProt:A0A078GU05 | EnsemblPlants:CDY28577 | ProteinID:CDY28577 | ProteinID:CDY28577.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00040547001 | InterPro:IPR017887 | PFAM:PF03634 | PFscan:PS51369 |
| PANTHER:PTHR31072 | PANTHER:PTHR31072:SF40 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI0004EE197E | SEG:seg |
Description
BnaC02g19460DBnaC02g19460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GU05]
Coordinates
chrLK032222:+:472404..473282
Molecular Weight (calculated)
25465.2 Da
IEP (calculated)
6.911
GRAVY (calculated)
-0.500
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MPAMCAARVF QLTRELGHKS DGETIEWLLQ QAEPAVIAAT GTGTIPANFA SLNISLRSSR SSLSAAHLRT APGSYYFHSP TMAHPHQVRP KHESHSSSSS
101: QLLDHNQMGN YLVQSTAGSL PTSQTPTTAP FWSSGDSTQN LWAFNINPHH SGEVYNTSGG GGGGGGAGGG GVHLMNFAAP IALFSGQPLA SGYGGGGGDH
201: NHYGVLAALN AAYRPVQETA SQQNREGDHH YSHQEDGSTS HHS
101: QLLDHNQMGN YLVQSTAGSL PTSQTPTTAP FWSSGDSTQN LWAFNINPHH SGEVYNTSGG GGGGGGAGGG GVHLMNFAAP IALFSGQPLA SGYGGGGGDH
201: NHYGVLAALN AAYRPVQETA SQQNREGDHH YSHQEDGSTS HHS
001: MDPDPDHNHR PNFPLQLLDS STSSSSTSLA IISTTSEPNS EPKKPPPKRT STKDRHTKVE GRGRRIRMPA MCAARVFQLT RELGHKSDGE TIEWLLQQAE
101: PAVIAATGTG TIPANFTSLN ISLRSSRSSL SAAHLRTTPS SYYFHSPHQS MTHHLQHQHQ VRPKNESHSS SSSSSQLLDH NQMGNYLVQS TAGSLPTSQS
201: PATAPFWSSG DNTQNLWAFN INPHHSGVVA GDVYNPNSGG SGGGSGVHLM NFAAPIALFS GQPLASGYGG GGGGGGEHSH YGVLAALNAA YRPVAETGNH
301: NNNQQNRDGD HHHNHQEDGS TSHHS
101: PAVIAATGTG TIPANFTSLN ISLRSSRSSL SAAHLRTTPS SYYFHSPHQS MTHHLQHQHQ VRPKNESHSS SSSSSQLLDH NQMGNYLVQS TAGSLPTSQS
201: PATAPFWSSG DNTQNLWAFN INPHHSGVVA GDVYNPNSGG SGGGSGVHLM NFAAPIALFS GQPLASGYGG GGGGGGEHSH YGVLAALNAA YRPVAETGNH
301: NNNQQNRDGD HHHNHQEDGS TSHHS
Arabidopsis Description
TCP15TCP15 [Source:UniProtKB/TrEMBL;Acc:A0A178WLV7]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.