CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY04768
CDY21400
CDY25761

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30050.1	CDY04768	AT1G22920.1	21798944
AT2G30050.1	CDY21400	AT1G22920.1	21798944
AT2G30050.1	CDY25761	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84863	Canola	cytosol	98.67	98.67
AT2G30050.1	Thale cress	cytosol	94.35	94.04
CDX97854	Canola	cytosol	93.69	93.69
CDY02025	Canola	cytosol	94.02	93.4
CDY49046	Canola	cytosol	88.04	87.75
CDY37530	Canola	cytosol	87.04	86.75
VIT_14s0066g02380.t01	Wine grape	cytosol	85.38	85.38
VIT_13s0106g00770.t01	Wine grape	cytosol	85.05	85.05
VIT_19s0015g00810.t01	Wine grape	cytosol	85.05	83.93
PGSC0003DMT400003265	Potato	cytosol	82.06	81.79
Solyc02g087300.1.1	Tomato	extracellular, nucleus	81.4	81.13
GSMUA_Achr7P26060_001	Banana	cytosol	81.06	80.79
GSMUA_Achr9P19430_001	Banana	cytosol	80.73	80.46
EES00059	Sorghum	cytosol	80.07	79.02
TraesCS5B01G499200.1	Wheat	cytosol	80.07	79.02
TraesCS3D01G145000.1	Wheat	cytosol	79.73	78.69
Os02t0135800-02	Rice	cytosol	79.73	78.69
TraesCS5A01G485600.1	Wheat	cytosol	79.4	78.36
Zm00001d008932_P001	Maize	extracellular	79.4	78.36
Zm00001d039365_P001	Maize	nucleus	79.4	78.36
HORVU3Hr1G027730.1	Barley	cytosol	79.4	78.36
TraesCS3B01G162400.1	Wheat	cytosol	78.74	77.96
TraesCS1D01G044700.1	Wheat	cytosol	77.41	77.41
TraesCS1A01G044200.1	Wheat	cytosol	78.41	77.38
CDY10705	Canola	cytosol	92.03	75.89
TraesCS1B01G057100.1	Wheat	cytosol	50.83	75.0
OQU89582	Sorghum	cytosol	77.08	71.6
GSMUA_Achr1P22590_001	Banana	plastid	80.73	57.45
GSMUA_Achr8P31110_001	Banana	cytosol	22.26	50.38
CDY29706	Canola	cytosol, plastid	93.69	40.87
CDY08370	Canola	plastid	20.93	19.21
CDY47852	Canola	cytosol	20.6	17.08

Protein Annotations

Gene3D:2.130.10.10	MapMan:22.4.1.1	UniProt:A0A078GC48	EnsemblPlants:CDY24035	ProteinID:CDY24035	ProteinID:CDY24035.1
InterPro:G-protein_beta_WD-40_rep	GO:GO:0000139	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020
GO:GO:0016043	GO:GO:0016192	GO:GO:0030127	GO:GO:0090114	GO:GO:1904263	EnsemblPlantsGene:GSBRNA2T00024562001
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR11024	PANTHER:PTHR11024:SF2	SMART:SM00320	SUPFAM:SSF50978	InterPro:Sec13
InterPro:Sec13/Seh1_fam	UniParc:UPI0001BA647C	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf

Description

BnaC03g16560DBnaC03g16560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GC48]

Coordinates

chrLK032152:-:578308..580508

Molecular Weight (calculated)

32604.2 Da

IEP (calculated)

6.166

GRAVY (calculated)

-0.285

Length

301 amino acids

Sequence
(BLAST)

001: MPGQKIETGH EDMVHDVQMD YYGKRVATAS SDCTIKITGV SNNGGSQHLA TLTGHRGPVW QVAWAHPKFG SFLASCSYDG QVILWKEGSQ NQWTQAHVFT
101: DHKSSVNSIA WAPHDLGLSL ACGSSDGNIS VFTGRADGGW DTTKIDQAHP VGVTSVSWAP ATAPGALVSS GLLDPVYKLA SGGCDNTVKV WKLSNGSWKM
201: DCFPALQKHT DWVRDVAWAP NLGLPKSTIA SGSQDGKVII WTVGKEGEQW EGKVLKDFMT PVWRVSWSLT GNMLAVSDGN NNMTVWKEAV DGEWEQVTVM
301: E

Best Arabidopsis Sequence Match ( AT2G30050.1 )
(BLAST)

001: MPGQKIETGH EDIVHDVQMD YYGKRIATAS SDCTIKITGV SNNGGSQQLA TLTGHRGPVW EVAWAHPKYG SILASCSYDG QVILWKEGNQ NQWTQDHVFT
101: DHKSSVNSIA WAPHDIGLSL ACGSSDGNIS VFTARADGGW DTSRIDQAHP VGVTSVSWAP ATAPGALVSS GLLDPVYKLA SGGCDNTVKV WKLANGSWKM
201: DCFPALQKHT DWVRDVAWAP NLGLPKSTIA SGSQDGKVII WTVGKEGEQW EGKVLKDFMT PVWRVSWSLT GNLLAVSDGN NNVTVWKEAV DGEWEQVTAV
301: EP

Arabidopsis Description

SEC13BProtein transport protein SEC13 homolog B [Source:UniProtKB/Swiss-Prot;Acc:O64740]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.