Factsheet for Zm00001d039365_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 20408568
nucleus: 24677780

msms PMID: 24677780 doi

B Guo, Y Chen, C Li, T Wang, R Wang, B Wang, S Hu, X Du, H Xing, X Song, Y Yao, Q Sun, Z Ni

State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002027_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30050.1	Zm00001d002027_P002	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00059	Sorghum	cytosol	98.36	98.36
Zm00001d008932_P001	Maize	extracellular	98.03	98.03
TraesCS1D01G044700.1	Wheat	cytosol	93.44	94.68
TraesCS1A01G044200.1	Wheat	cytosol	94.43	94.43
Os02t0135800-02	Rice	cytosol	94.43	94.43
HORVU3Hr1G027730.1	Barley	cytosol	94.43	94.43
TraesCS5A01G485600.1	Wheat	cytosol	94.43	94.43
TraesCS3D01G145000.1	Wheat	cytosol	94.1	94.1
TraesCS5B01G499200.1	Wheat	cytosol	94.1	94.1
TraesCS1B01G057100.1	Wheat	cytosol	62.3	93.14
TraesCS3B01G162400.1	Wheat	cytosol	92.13	92.43
GSMUA_Achr7P26060_001	Banana	cytosol	85.25	86.09
GSMUA_Achr9P19430_001	Banana	cytosol	83.93	84.77
KRH46249	Soybean	endoplasmic reticulum, nucleus	83.28	84.39
VIT_14s0066g02380.t01	Wine grape	cytosol	82.95	84.05
KRG98707	Soybean	endoplasmic reticulum, nucleus	82.95	84.05
VIT_13s0106g00770.t01	Wine grape	cytosol	82.62	83.72
KRH46229	Soybean	cytosol	82.62	83.72
KRG98686	Soybean	endoplasmic reticulum, nucleus	82.3	83.39
VIT_19s0015g00810.t01	Wine grape	cytosol	81.31	81.31
PGSC0003DMT400003265	Potato	cytosol	80.0	80.79
Solyc02g087300.1.1	Tomato	extracellular, nucleus	80.0	80.79
CDY24035	Canola	cytosol	78.36	79.4
AT2G30050.1	Thale cress	cytosol	78.36	79.14
CDX84863	Canola	cytosol	78.03	79.07
Bra022774.1-P	Field mustard	cytosol	78.03	79.07
CDY02025	Canola	cytosol	78.36	78.88
CDY37530	Canola	cytosol	77.7	78.48
Bra039126.1-P	Field mustard	cytosol	77.38	78.15
CDY49046	Canola	cytosol	77.05	77.81
AT3G01340.1	Thale cress	cytosol	76.72	77.48
CDX97854	Canola	cytosol	76.07	77.08
PGSC0003DMT400006490	Potato	cytosol	75.74	76.74
Solyc03g120900.1.1	Tomato	cytosol	74.75	75.75
CDY10705	Canola	cytosol	77.7	64.93
Bra018343.1-P	Field mustard	cytosol	77.7	64.93
GSMUA_Achr1P22590_001	Banana	plastid	83.61	60.28
Zm00001d005461_P001	Maize	cytosol, nucleus	60.66	58.92
Zm00001d019287_P001	Maize	cytosol, extracellular	60.98	56.53
GSMUA_Achr8P31110_001	Banana	cytosol	24.59	56.39
CDY29706	Canola	cytosol, plastid	76.39	33.77
Bra021603.1-P	Field mustard	plastid	76.39	33.67
Zm00001d044193_P002	Maize	peroxisome	23.61	22.29

Protein Annotations

EntrezGene:100282624	Gene3D:2.130.10.10	MapMan:22.4.1.1	UniProt:B6UBG2	EMBL:BT055753	EMBL:EU974577
InterPro:G-protein_beta_WD-40_rep	GO:GO:0000139	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020
GO:GO:0016043	GO:GO:0016192	GO:GO:0030127	GO:GO:0090114	GO:GO:1904263	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	ProteinID:ONM28461.1	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR11024	PANTHER:PTHR11024:SF2	SMART:SM00320	SUPFAM:SSF50978	InterPro:Sec13
InterPro:Sec13/Seh1_fam	UniParc:UPI000182F5BA	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
EnsemblPlantsGene:Zm00001d039365	EnsemblPlants:Zm00001d039365_P001	EnsemblPlants:Zm00001d039365_T001	:	:	:

Description

Protein transport protein SEC13 homolog B

Coordinates

chr3:-:2632877..2633794

Molecular Weight (calculated)

33141.8 Da

IEP (calculated)

6.277

GRAVY (calculated)

-0.242

Length

305 amino acids

Sequence
(BLAST)

001: MPPHKIETGH QDVVHDIAMD YYGKRLATAS SDNTIKIIGV SGTSHQQLAT LSGHQGPVWQ VAWAHPKFGS MLASCSYDGR VIIWKEGSKP DEWALAHTFA
101: EHKSSVNSIA WAPHELGLCL ACGSSDGNIS VFAARSDGGW DTTRIDQAHP VGVTSVSWAP AMAPGALISA GSSGQFEYVQ KLASGGCDNT VKVWKLNNGS
201: WRMDCFPALQ MHKDWVRDVA WAPNLGLPKS TIASASQDGT VVIWTAAKEG EQWDGRVLYD FRTPVWRLSW SLTGNILAVS DGNNNVTLWK EAVDGEWQQV
301: TTVEP

Best Arabidopsis Sequence Match ( AT2G30050.1 )
(BLAST)

001: MPGQKIETGH EDIVHDVQMD YYGKRIATAS SDCTIKITGV SNNGGSQQLA TLTGHRGPVW EVAWAHPKYG SILASCSYDG QVILWKEGNQ NQWTQDHVFT
101: DHKSSVNSIA WAPHDIGLSL ACGSSDGNIS VFTARADGGW DTSRIDQAHP VGVTSVSWAP ATAPGALVSS GLLDPVYKLA SGGCDNTVKV WKLANGSWKM
201: DCFPALQKHT DWVRDVAWAP NLGLPKSTIA SGSQDGKVII WTVGKEGEQW EGKVLKDFMT PVWRVSWSLT GNLLAVSDGN NNVTVWKEAV DGEWEQVTAV
301: EP

Arabidopsis Description

SEC13BProtein transport protein SEC13 homolog B [Source:UniProtKB/Swiss-Prot;Acc:O64740]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.