Factsheet for Bra018343.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	endoplasmic reticulum
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012351.1-P
Bra024548.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30050.1	Bra012351.1-P	AT1G22920.1	21798944
AT2G30050.1	Bra024548.1-P	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10705	Canola	cytosol	100.0	100.0
Bra022774.1-P	Field mustard	cytosol	75.62	91.69
AT2G30050.1	Thale cress	cytosol	74.52	90.07
VIT_14s0066g02380.t01	Wine grape	cytosol	70.14	85.05
VIT_13s0106g00770.t01	Wine grape	cytosol	69.86	84.72
VIT_19s0015g00810.t01	Wine grape	cytosol	69.86	83.61
Bra039126.1-P	Field mustard	cytosol	69.04	83.44
PGSC0003DMT400003265	Potato	cytosol	67.95	82.12
Solyc02g087300.1.1	Tomato	extracellular, nucleus	67.67	81.79
GSMUA_Achr7P26060_001	Banana	cytosol	67.12	81.13
GSMUA_Achr9P19430_001	Banana	cytosol	65.48	79.14
TraesCS5B01G499200.1	Wheat	cytosol	65.75	78.69
EES00059	Sorghum	cytosol	65.48	78.36
TraesCS3D01G145000.1	Wheat	cytosol	65.48	78.36
HORVU3Hr1G027730.1	Barley	cytosol	65.21	78.03
TraesCS1A01G044200.1	Wheat	cytosol	65.21	78.03
TraesCS5A01G485600.1	Wheat	cytosol	65.21	78.03
TraesCS1D01G044700.1	Wheat	cytosol	64.11	77.74
Zm00001d039365_P001	Maize	nucleus	64.93	77.7
Zm00001d008932_P001	Maize	extracellular	64.93	77.7
Os02t0135800-02	Rice	cytosol	64.93	77.7
TraesCS3B01G162400.1	Wheat	cytosol	64.38	77.3
TraesCS1B01G057100.1	Wheat	cytosol	41.64	74.51
OQU89582	Sorghum	cytosol	63.01	70.99
GSMUA_Achr1P22590_001	Banana	plastid	66.3	57.21
GSMUA_Achr8P31110_001	Banana	cytosol	17.81	48.87
Bra021603.1-P	Field mustard	plastid	74.52	39.31
Bra027738.1-P	Field mustard	plastid	17.81	19.82

Protein Annotations

Gene3D:2.130.10.10	MapMan:22.4.1.1	EnsemblPlantsGene:Bra018343	EnsemblPlants:Bra018343.1	EnsemblPlants:Bra018343.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0000139	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043
GO:GO:0016192	GO:GO:0030127	GO:GO:0090114	GO:GO:1904263	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	UniProt:M4DPA2	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR11024	PANTHER:PTHR11024:SF2	SMART:SM00320	SUPFAM:SSF50978	InterPro:Sec13	InterPro:Sec13/Seh1_fam
UniParc:UPI0002547C7F	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

AT2G30050 (E=1e-167) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA05:-:7605308..7607188

Molecular Weight (calculated)

39568.2 Da

IEP (calculated)

6.137

GRAVY (calculated)

-0.433

Length

365 amino acids

Sequence
(BLAST)

001: MAGHKIETGH EDTVHDVQMD YYGKRVATAS SDCTIKITGV SNNGASQHLA TLTGHRGPVW EVAWAHPKFG SMLASCSYDG QVILWKEGSQ NQWTQAHVFT
101: DHKTSVSSIA WAPYELGLSL ACGSSDGNIS VFTGRGDGGW DTTKIDQAHP VGVTSVSWAP STAPGALVSS GLLDPVYKLA SGGCDNTVKV WKLSNGSWKM
201: DCFPALQKHS DWVRDVAWAP NLGLPKSTIA SGSQDGKVVI WTVGKEGEQW EGKVLNDFKA PVWRVSWSLT GNLLAVSDGN NNVTVWKEAV DGEWQQTAKH
301: LWKKFKEVAK FEEAKEESKD ASQAAGLLEK LTVEEKEEKP VEKVASAEAE KAVEEKKTKE SVPSA

Best Arabidopsis Sequence Match ( AT2G30050.1 )
(BLAST)

001: MPGQKIETGH EDIVHDVQMD YYGKRIATAS SDCTIKITGV SNNGGSQQLA TLTGHRGPVW EVAWAHPKYG SILASCSYDG QVILWKEGNQ NQWTQDHVFT
101: DHKSSVNSIA WAPHDIGLSL ACGSSDGNIS VFTARADGGW DTSRIDQAHP VGVTSVSWAP ATAPGALVSS GLLDPVYKLA SGGCDNTVKV WKLANGSWKM
201: DCFPALQKHT DWVRDVAWAP NLGLPKSTIA SGSQDGKVII WTVGKEGEQW EGKVLKDFMT PVWRVSWSLT GNLLAVSDGN NNVTVWKEAV DGEWEQVTAV
301: EP

Arabidopsis Description

SEC13BProtein transport protein SEC13 homolog B [Source:UniProtKB/Swiss-Prot;Acc:O64740]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.