Factsheet for VIT_19s0015g00810.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g04360.t01
VIT_09s0002g03780.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30050.1	VIT_03s0038g04360.t01	AT1G22920.1	21798944
AT3G01340.1	VIT_09s0002g03780.t01	AT3G16300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0106g00770.t01	Wine grape	cytosol	96.72	98.01
VIT_14s0066g02380.t01	Wine grape	cytosol	95.41	96.68
PGSC0003DMT400003265	Potato	cytosol	87.87	88.74
Solyc02g087300.1.1	Tomato	extracellular, nucleus	87.54	88.41
CDY02025	Canola	cytosol	84.92	85.48
CDY24035	Canola	cytosol	83.93	85.05
GSMUA_Achr9P19430_001	Banana	cytosol	83.93	84.77
GSMUA_Achr7P26060_001	Banana	cytosol	83.93	84.77
Bra022774.1-P	Field mustard	cytosol	83.61	84.72
CDX84863	Canola	cytosol	83.61	84.72
AT2G30050.1	Thale cress	cytosol	83.61	84.44
CDX97854	Canola	cytosol	81.97	83.06
AT3G01340.1	Thale cress	cytosol	81.64	82.45
EES00059	Sorghum	cytosol	81.97	81.97
TraesCS5B01G499200.1	Wheat	cytosol	81.97	81.97
Os02t0135800-02	Rice	cytosol	81.97	81.97
TraesCS3D01G145000.1	Wheat	cytosol	81.64	81.64
Zm00001d039365_P001	Maize	nucleus	81.31	81.31
Zm00001d008932_P001	Maize	extracellular	81.31	81.31
TraesCS5A01G485600.1	Wheat	cytosol	81.31	81.31
HORVU3Hr1G027730.1	Barley	cytosol	81.31	81.31
CDY49046	Canola	cytosol	80.0	80.79
TraesCS1D01G044700.1	Wheat	cytosol	79.67	80.73
TraesCS1A01G044200.1	Wheat	cytosol	80.66	80.66
Bra039126.1-P	Field mustard	cytosol	79.67	80.46
CDY37530	Canola	cytosol	79.67	80.46
TraesCS3B01G162400.1	Wheat	cytosol	80.0	80.26
TraesCS1B01G057100.1	Wheat	cytosol	51.15	76.47
OQU89582	Sorghum	cytosol	77.7	73.15
CDY10705	Canola	cytosol	83.61	69.86
Bra018343.1-P	Field mustard	cytosol	83.61	69.86
GSMUA_Achr1P22590_001	Banana	plastid	83.28	60.05
GSMUA_Achr8P31110_001	Banana	cytosol	23.93	54.89
CDY29706	Canola	cytosol, plastid	81.97	36.23
Bra021603.1-P	Field mustard	plastid	81.64	35.98
VIT_02s0025g01250.t01	Wine grape	cytosol	23.93	22.46

Protein Annotations

EntrezGene:100242906	wikigene:100242906	Gene3D:2.130.10.10	MapMan:22.4.1.1	EMBL:AM424343	EMBL:AM445906
EMBL:AM459063	ProteinID:CAN63472	ProteinID:CAN63472.1	ProteinID:CAN79974	ProteinID:CAN79974.1	ProteinID:CAN80755
ProteinID:CAN80755.1	ProteinID:CBI39765	ProteinID:CBI39765.3	UniProt:D7UAK0	EMBL:FN596747	InterPro:G-protein_beta_WD-40_rep
GO:GO:0000139	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043
GO:GO:0016192	GO:GO:0030127	GO:GO:0090114	GO:GO:1904263	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	EntrezGene:LOC100242906	wikigene:LOC100242906	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR11024	PANTHER:PTHR11024:SF2	SMART:SM00320	SUPFAM:SSF50978	InterPro:Sec13
InterPro:Sec13/Seh1_fam	UniParc:UPI0001BE5394	ArrayExpress:VIT_19s0015g00810	EnsemblPlantsGene:VIT_19s0015g00810	EnsemblPlants:VIT_19s0015g00810.t01	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002266827	RefSeq:XP_002266827.2	:

Description

No Description!

Coordinates

chr19:+:8933245..8934203

Molecular Weight (calculated)

33038.8 Da

IEP (calculated)

6.668

GRAVY (calculated)

-0.218

Length

305 amino acids

Sequence
(BLAST)

001: MPSQKIKTGH QDTVHDVAMD YYGKRVATAS SDSTVKIIGV SNNASQHLAT LTGHQGPVWQ VAWAHPKFGS ILASCSCDGR VIIWKEGNQN DWTQAHVFSD
101: RKSSVNSIAW APHELGLCLA CGSSDGNISV FTARSDGAWD TTKIDQAHPV GVTSVSWAPS MAPGALVGSG LLDPVQKLVS GGCDNTVKVW KLYNGNWKMD
201: CFPALQMHTD WVRDVAWAPN LGLPKSTIAS ASQDGTVVIW TVGKEGDQWE GKVLKDFKTP VWRVSWSLTG NLLAVADGNN NVTLWKEAVD GEWQQVTTVD
301: PYHLA

Best Arabidopsis Sequence Match ( AT2G30050.1 )
(BLAST)

001: MPGQKIETGH EDIVHDVQMD YYGKRIATAS SDCTIKITGV SNNGGSQQLA TLTGHRGPVW EVAWAHPKYG SILASCSYDG QVILWKEGNQ NQWTQDHVFT
101: DHKSSVNSIA WAPHDIGLSL ACGSSDGNIS VFTARADGGW DTSRIDQAHP VGVTSVSWAP ATAPGALVSS GLLDPVYKLA SGGCDNTVKV WKLANGSWKM
201: DCFPALQKHT DWVRDVAWAP NLGLPKSTIA SGSQDGKVII WTVGKEGEQW EGKVLKDFMT PVWRVSWSLT GNLLAVSDGN NNVTVWKEAV DGEWEQVTAV
301: EP

Arabidopsis Description

SEC13BProtein transport protein SEC13 homolog B [Source:UniProtKB/Swiss-Prot;Acc:O64740]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.