Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49046 | Canola | cytosol | 93.38 | 93.38 |
| Bra039126.1-P | Field mustard | cytosol | 92.72 | 92.72 |
| CDY37530 | Canola | cytosol | 92.72 | 92.72 |
| AT2G30050.1 | Thale cress | cytosol | 89.07 | 89.07 |
| VIT_14s0066g02380.t01 | Wine grape | cytosol | 82.78 | 83.06 |
| VIT_13s0106g00770.t01 | Wine grape | cytosol | 82.45 | 82.72 |
| VIT_19s0015g00810.t01 | Wine grape | cytosol | 82.45 | 81.64 |
| PGSC0003DMT400003265 | Potato | cytosol | 80.13 | 80.13 |
| Solyc02g087300.1.1 | Tomato | extracellular, nucleus | 79.47 | 79.47 |
| GSMUA_Achr7P26060_001 | Banana | cytosol | 78.15 | 78.15 |
| GSMUA_Achr9P19430_001 | Banana | cytosol | 77.81 | 77.81 |
| TraesCS5B01G499200.1 | Wheat | cytosol | 78.48 | 77.7 |
| TraesCS3D01G145000.1 | Wheat | cytosol | 77.81 | 77.05 |
| Zm00001d039365_P001 | Maize | nucleus | 77.48 | 76.72 |
| EES00059 | Sorghum | cytosol | 77.48 | 76.72 |
| TraesCS5A01G485600.1 | Wheat | cytosol | 77.48 | 76.72 |
| TraesCS3B01G162400.1 | Wheat | cytosol | 77.15 | 76.64 |
| Os02t0135800-02 | Rice | cytosol | 77.15 | 76.39 |
| HORVU3Hr1G027730.1 | Barley | cytosol | 77.15 | 76.39 |
| Zm00001d008932_P001 | Maize | extracellular | 77.15 | 76.39 |
| TraesCS1D01G044700.1 | Wheat | cytosol | 75.5 | 75.75 |
| TraesCS1A01G044200.1 | Wheat | cytosol | 76.49 | 75.74 |
| TraesCS1B01G057100.1 | Wheat | cytosol | 49.01 | 72.55 |
| OQU89582 | Sorghum | cytosol | 75.17 | 70.06 |
| GSMUA_Achr1P22590_001 | Banana | plastid | 77.48 | 55.32 |
| GSMUA_Achr8P31110_001 | Banana | cytosol | 21.52 | 48.87 |
| AT1G64350.1 | Thale cress | plastid | 20.2 | 18.71 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:22.4.1.1 | EntrezGene:821216 | UniProt:A0A178VCP4 | ProteinID:AAF03492.1 | ProteinID:AEE73651.1 |
| ProteinID:AEE73652.1 | EMBL:AF370262 | ArrayExpress:AT3G01340 | EnsemblPlantsGene:AT3G01340 | RefSeq:AT3G01340 | TAIR:AT3G01340 |
| RefSeq:AT3G01340-TAIR-G | EnsemblPlants:AT3G01340.1 | TAIR:AT3G01340.1 | EMBL:AY063079 | EMBL:AY087647 | Unigene:At.18565 |
| InterPro:G-protein_beta_WD-40_rep | GO:GO:0000139 | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005794 |
| GO:GO:0005829 | GO:GO:0006810 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0030127 | GO:GO:0090114 |
| GO:GO:1904263 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | RefSeq:NP_001030616.1 | RefSeq:NP_186783.1 |
| ProteinID:OAP04167.1 | PFAM:PF00400 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00320 | PFscan:PS50082 | PFscan:PS50294 |
| PANTHER:PTHR11024 | PANTHER:PTHR11024:SF2 | UniProt:Q9SRI1 | SMART:SM00320 | SUPFAM:SSF50978 | InterPro:Sec13 |
| InterPro:Sec13/Seh1_fam | UniParc:UPI00000A2600 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
Description
SEC13AProtein transport protein SEC13 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9SRI1]
Coordinates
chr3:-:127303..128994
Molecular Weight (calculated)
32632.1 Da
IEP (calculated)
5.976
GRAVY (calculated)
-0.240
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPQKIETGH SDTIHDVVMD YYGKRVATAS SDCTIKITGV SNSGGSQHLA TLTGHRGPVW QVAWAHPKFG SLLASCSYDG QIILWKEGNQ NQWTQAHVFT
101: DHKVSVNSIA WAPHELGLSL ACGASDGNIS VFSARADGGW DTTKIDQAHP VGVTSVSWAP ATEPGALVSS GMIDPVYKLA SGGCDSTVKV WKFSNGSWKM
201: DCFPALNKHT DWVRDVAWAP NLGLPKSTIA SGSEDGKVII WTIGKEGEQW EGTVLKDFKT PVWRVSWSLT GNLLAVSDGN NNVTVWKESV DGEWEQVTVV
301: EP
101: DHKVSVNSIA WAPHELGLSL ACGASDGNIS VFSARADGGW DTTKIDQAHP VGVTSVSWAP ATEPGALVSS GMIDPVYKLA SGGCDSTVKV WKFSNGSWKM
201: DCFPALNKHT DWVRDVAWAP NLGLPKSTIA SGSEDGKVII WTIGKEGEQW EGTVLKDFKT PVWRVSWSLT GNLLAVSDGN NNVTVWKESV DGEWEQVTVV
301: EP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.