Skip to main content
crop-pal logo
Thale cress
Search for another protein from :
Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 6
  • mitochondrion 1
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra027738.1-P Field mustard plastid 86.5 85.98
CDY08370 Canola plastid 85.28 84.76
CDY47852 Canola cytosol 85.89 77.14
KRH27852 Soybean cytosol, nucleus 68.4 68.4
VIT_02s0025g01250.t01 Wine grape cytosol 66.87 67.08
KRH77634 Soybean cytosol, nucleus 64.11 64.11
Solyc08g082100.2.1 Tomato nucleus 63.8 64.0
PGSC0003DMT400032040 Potato cytosol 65.03 58.4
TraesCS3B01G253300.1 Wheat cytosol 56.75 57.28
TraesCS3A01G223900.1 Wheat cytosol 56.75 57.28
Os01t0620100-01 Rice nucleus 56.75 57.1
GSMUA_Achr2P06320_001 Banana cytosol 57.67 56.97
TraesCS3D01G229700.1 Wheat cytosol 55.83 56.35
Zm00001d044193_P002 Maize peroxisome 55.21 55.73
HORVU3Hr1G055410.2 Barley cytosol 55.21 55.73
EES03291 Sorghum cytosol 55.21 55.56
AT2G30050.1 Thale cress cytosol 19.02 20.53
AT3G01340.1 Thale cress cytosol 18.71 20.2
Protein Annotations
Gene3D:2.130.10.10MapMan:23.5.1.1.1.7EntrezGene:842741UniProt:A0A178WA50ProteinID:AAG51710.1ProteinID:AEE34229.1
EMBL:AF325901EMBL:AF370222ArrayExpress:AT1G64350EnsemblPlantsGene:AT1G64350RefSeq:AT1G64350TAIR:AT1G64350
RefSeq:AT1G64350-TAIR-GEnsemblPlants:AT1G64350.1TAIR:AT1G64350.1EMBL:AY059116EMBL:AY087489Unigene:At.25592
GO:GO:0003674GO:GO:0005198GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005635GO:GO:0005643GO:GO:0005737GO:GO:0006810
GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0009987GO:GO:0015031GO:GO:0051028
GO:GO:1904263InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986RefSeq:NP_564830.1InterPro:Nucleoporin_Seh1
ProteinID:OAP14641.1PFAM:PF00400PO:PO:0000013PO:PO:0000037PO:PO:0000084PO:PO:0000230
PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507
PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123
PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009
PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032
PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100
PO:PO:0020137PO:PO:0025022PO:PO:0025281PFscan:PS50082PFscan:PS50294PANTHER:PTHR11024
PANTHER:PTHR11024:SF3UniProt:Q93VR9Symbol:SEH1HSMART:SM00320SUPFAM:SSF50978InterPro:Sec13/Seh1_fam
UniParc:UPI00000AA6D1InterPro:WD40/YVTN_repeat-like_dom_sfInterPro:WD40_repeatInterPro:WD40_repeat_domInterPro:WD40_repeat_dom_sfSEG:seg
Description
SEH1Protein SEH1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VR9]
Coordinates
chr1:+:23881512..23883354
Molecular Weight (calculated)
35697.9 Da
IEP (calculated)
4.703
GRAVY (calculated)
-0.263
Length
326 amino acids
Sequence
(BLAST)
001: MAKSMATLDS GTTCSSWNQS GDRLAAGSLN GKLSIYESST SSSSTFSCTS KVRVSESSIV KIVWLPSEYG DAVACVCEDG SLSIWEELSE DAHGLEWKLC
101: KSMKNKSSQV LDVQFGVSRK SLKMVAAYSD GYLRVFELLN PLELKNWQLQ AEFQNVIDSL STLGKPSSLS ASVSWNPMKG EEQEPSFVLA FNSDSPHLNS
201: SKIWEFDEAH NRWLAVAELA LPEDKGDPVY ALSWAPNIGR PYEVVAVATH KGIGIWHVGL APDLEGRLPV KKVSSLSGHQ GEVWQMEWDM SGMTLASTGS
301: DGMVKLWQSN LNGEWHEQAT LEPVPS
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.