Factsheet for PGSC0003DMT400032040

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g082100.2.1	Tomato	nucleus	86.23	96.31
VIT_02s0025g01250.t01	Wine grape	cytosol	66.12	73.85
KRH77634	Soybean	cytosol, nucleus	63.09	70.25
KRH27852	Soybean	cytosol, nucleus	62.53	69.63
AT1G64350.1	Thale cress	plastid	58.4	65.03
Bra027738.1-P	Field mustard	plastid	58.4	64.63
CDY08370	Canola	plastid	58.13	64.33
GSMUA_Achr2P06320_001	Banana	cytosol	57.58	63.33
TraesCS3A01G223900.1	Wheat	cytosol	53.17	59.75
TraesCS3B01G253300.1	Wheat	cytosol	52.89	59.44
TraesCS3D01G229700.1	Wheat	cytosol	52.34	58.82
HORVU3Hr1G055410.2	Barley	cytosol	52.07	58.51
CDY47852	Canola	cytosol	58.4	58.4
Os01t0620100-01	Rice	nucleus	51.79	58.02
Zm00001d044193_P002	Maize	peroxisome	51.52	57.89
EES03291	Sorghum	cytosol	51.52	57.72
PGSC0003DMT400006490	Potato	cytosol	20.66	24.92
PGSC0003DMT400003265	Potato	cytosol	19.01	22.85

Protein Annotations

EntrezGene:102593762	MapMan:23.5.1.1.1.7	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0006810
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:1904263
InterPro:IPR001680	InterPro:IPR017986	UniProt:M1AWQ8	InterPro:Nucleoporin_Seh1	PFAM:PF00400	EnsemblPlantsGene:PGSC0003DMG400012295
PGSC:PGSC0003DMG400012295	EnsemblPlants:PGSC0003DMT400032040	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR11024	PANTHER:PTHR11024:SF3
SMART:SM00320	SUPFAM:SSF50978	InterPro:Sec13/Seh1_fam	UniParc:UPI000294C5FE	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	:	:	:	:	:

Description

WD40 repeat nucleoporin similar to SEH1 [Source:PGSC_GENE;Acc:PGSC0003DMG400012295]

Coordinates

chr8:+:55740337..55745468

Molecular Weight (calculated)

40428.7 Da

IEP (calculated)

4.642

GRAVY (calculated)

-0.172

Length

363 amino acids

Sequence
(BLAST)

001: MDKAIIKLDE GTTCTAWNYS GHRLAAGSTD GTLSLFDSTD PASSVFNCSS KFKVHESSIV KVVWAPPEYG DVVACICADG RLLLWEEVGE DSELLQWKLC
101: KCFDRISSQV LDVQFGVSQT SLKLLIGLVN EFIWKERRGT STRSDVTRYN LPTVKLCHKM LEVAAYSDGQ VKVFELLDPF ELKNWQLQAE FQNVIESVSK
201: FGNVSCRSAS IAWNPLKGEI QQSSFVLGFD SDTPHLNSSK VWEFDQDHQR WLPVAELALP ADKADPVSTV AWAPNIGRPY ELIAVATCKE IALWHVGSNP
301: DSDGRLSVEK VAMLSTHDSE VWQMEWDMSG MTLATTGSDG VVRLWQCNLN GVWHEQATLE PTS

Best Arabidopsis Sequence Match ( AT1G64350.1 )
(BLAST)

001: MAKSMATLDS GTTCSSWNQS GDRLAAGSLN GKLSIYESST SSSSTFSCTS KVRVSESSIV KIVWLPSEYG DAVACVCEDG SLSIWEELSE DAHGLEWKLC
101: KSMKNKSSQV LDVQFGVSRK SLKMVAAYSD GYLRVFELLN PLELKNWQLQ AEFQNVIDSL STLGKPSSLS ASVSWNPMKG EEQEPSFVLA FNSDSPHLNS
201: SKIWEFDEAH NRWLAVAELA LPEDKGDPVY ALSWAPNIGR PYEVVAVATH KGIGIWHVGL APDLEGRLPV KKVSSLSGHQ GEVWQMEWDM SGMTLASTGS
301: DGMVKLWQSN LNGEWHEQAT LEPVPS

Arabidopsis Description

SEH1Protein SEH1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VR9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.