CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027738.1-P	Field mustard	plastid	88.15	97.56
CDY08370	Canola	plastid	85.12	94.21
AT1G64350.1	Thale cress	plastid	77.14	85.89
KRH27852	Soybean	cytosol, nucleus	60.33	67.18
VIT_02s0025g01250.t01	Wine grape	cytosol	59.78	66.77
Solyc08g082100.2.1	Tomato	nucleus	57.85	64.62
KRH77634	Soybean	cytosol, nucleus	57.02	63.5
PGSC0003DMT400032040	Potato	cytosol	58.4	58.4
GSMUA_Achr2P06320_001	Banana	cytosol	52.34	57.58
EES03291	Sorghum	cytosol	50.41	56.48
Os01t0620100-01	Rice	nucleus	50.41	56.48
TraesCS3A01G223900.1	Wheat	cytosol	49.86	56.04
TraesCS3B01G253300.1	Wheat	cytosol	49.86	56.04
Zm00001d044193_P002	Maize	peroxisome	49.86	56.04
HORVU3Hr1G055410.2	Barley	cytosol	49.31	55.42
TraesCS3D01G229700.1	Wheat	cytosol	49.31	55.42
CDY37530	Canola	cytosol	18.46	22.19
CDX97854	Canola	cytosol	17.91	21.59
CDX84863	Canola	cytosol	17.91	21.59
CDY49046	Canola	cytosol	17.63	21.19
CDY02025	Canola	cytosol	17.63	21.12
CDY24035	Canola	cytosol	17.08	20.6
CDY10705	Canola	cytosol	17.36	17.26
CDY29706	Canola	cytosol, plastid	17.91	9.42

Protein Annotations

Gene3D:2.130.10.10	MapMan:23.5.1.1.1.7	UniProt:A0A078ICK2	EnsemblPlants:CDY47852	ProteinID:CDY47852	ProteinID:CDY47852.1
GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0006810	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:1904263	EnsemblPlantsGene:GSBRNA2T00088326001
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:Nucleoporin_Seh1	PFAM:PF00400	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR11024	PANTHER:PTHR11024:SF3	SMART:SM00320	SUPFAM:SSF50978	InterPro:Sec13/Seh1_fam
UniParc:UPI0004EDBC8C	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

BnaA09g12310DBnaA09g12310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ICK2]

Coordinates

chrLK032740:-:134374..136363

Molecular Weight (calculated)

40074.2 Da

IEP (calculated)

5.002

GRAVY (calculated)

-0.265

Length

363 amino acids

Sequence
(BLAST)

001: MTHELKTARR IGPIIQFLRF GNLSEPPTGV IQCARRRERD MATLDSGTTC SSWNYSGHRL AAGSVDGTLS VYDSPVPSSY SSFTRSSKVR VSESSLVKIV
101: WLPSEYGDAV ACICEDGSLS IWEEVSEDTH ALEWKLCKSL MSKSSQVLDV QFGVSRKSLK MVAAYSDGYL RVFELLNPLE LKNWQLQAEF QNVIDSLSAL
201: GKPSTLSASV SWNPMRSGEQ EPSFVLAFNS DSPHLNSSKI WEFDEAHNRW LAVAELASPE DKGDPVYAVS WAPNIGRPYE VVAVATHKGI GIWQVGLAPD
301: LDGRLPVKKA ASLSGHQGEV WEMEWDMSGM TLATTGSDGM VRLWQSNLNG EWHEQAMLEP VPS

Best Arabidopsis Sequence Match ( AT1G64350.1 )
(BLAST)

001: MAKSMATLDS GTTCSSWNQS GDRLAAGSLN GKLSIYESST SSSSTFSCTS KVRVSESSIV KIVWLPSEYG DAVACVCEDG SLSIWEELSE DAHGLEWKLC
101: KSMKNKSSQV LDVQFGVSRK SLKMVAAYSD GYLRVFELLN PLELKNWQLQ AEFQNVIDSL STLGKPSSLS ASVSWNPMKG EEQEPSFVLA FNSDSPHLNS
201: SKIWEFDEAH NRWLAVAELA LPEDKGDPVY ALSWAPNIGR PYEVVAVATH KGIGIWHVGL APDLEGRLPV KKVSSLSGHQ GEVWQMEWDM SGMTLASTGS
301: DGMVKLWQSN LNGEWHEQAT LEPVPS

Arabidopsis Description

SEH1Protein SEH1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VR9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.