CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G64350.1	Thale cress	plastid	84.76	85.28
CDY47852	Canola	cytosol	94.21	85.12
KRH27852	Soybean	cytosol, nucleus	67.07	67.48
VIT_02s0025g01250.t01	Wine grape	cytosol	66.46	67.08
Solyc08g082100.2.1	Tomato	nucleus	63.72	64.31
KRH77634	Soybean	cytosol, nucleus	63.41	63.8
PGSC0003DMT400032040	Potato	cytosol	64.33	58.13
GSMUA_Achr2P06320_001	Banana	cytosol	57.01	56.67
Os01t0620100-01	Rice	nucleus	55.79	56.48
Zm00001d044193_P002	Maize	peroxisome	54.57	55.42
EES03291	Sorghum	cytosol	54.57	55.25
TraesCS3A01G223900.1	Wheat	cytosol	54.27	55.11
TraesCS3B01G253300.1	Wheat	cytosol	54.27	55.11
HORVU3Hr1G055410.2	Barley	cytosol	53.66	54.49
TraesCS3D01G229700.1	Wheat	cytosol	53.66	54.49
CDY37530	Canola	cytosol	20.43	22.19
CDX97854	Canola	cytosol	20.12	21.93
CDX84863	Canola	cytosol	20.12	21.93
CDY02025	Canola	cytosol	19.82	21.45
CDY49046	Canola	cytosol	19.51	21.19
CDY24035	Canola	cytosol	19.21	20.93
CDY10705	Canola	cytosol	19.82	17.81
CDY29706	Canola	cytosol, plastid	20.12	9.57

Protein Annotations

Gene3D:2.130.10.10	MapMan:23.5.1.1.1.7	UniProt:A0A078F1N2	EnsemblPlants:CDY08370	ProteinID:CDY08370	ProteinID:CDY08370.1
GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0006810	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:1904263	EnsemblPlantsGene:GSBRNA2T00000095001
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:Nucleoporin_Seh1	PFAM:PF00400	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR11024	PANTHER:PTHR11024:SF3	SMART:SM00320	SUPFAM:SSF50978	InterPro:Sec13/Seh1_fam
UniParc:UPI0004EC567D	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

BnaC09g12260DBnaC09g12260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F1N2]

Coordinates

chrLK031985:+:631832..633541

Molecular Weight (calculated)

35878.0 Da

IEP (calculated)

4.623

GRAVY (calculated)

-0.216

Length

328 amino acids

Sequence
(BLAST)

001: MATKSMATLD SGTTCSSWNY SGHRLAGGSV DGTLSVYDSP VPSSYSSFTR SSKVRVSESS LVKIVWLPSE YGDAVACVCE DGSLSIWEEV SEDTHALEWK
101: LCKSLMSKSS QVLDVQFGVS RKSLKMVAAY SDGFLRVFEL LNPLELKNWQ LQAEFQNVID SLSALGKPST LSASVSWNPM RSGEQEPSFV LAFNSDSPHL
201: NSSKIWEFDE AHNRWLAVAE LASPEDKGDP VYAVSWAPNI GRPYEVVAVA THKGIGIWQV GLAPDLDGRL PVKKAASLSG HQGEVWEMEW DMSGMSLATT
301: GSDGMVRLWQ SNLNGEWHEQ AMLEPVSS

Best Arabidopsis Sequence Match ( AT1G64350.1 )
(BLAST)

001: MAKSMATLDS GTTCSSWNQS GDRLAAGSLN GKLSIYESST SSSSTFSCTS KVRVSESSIV KIVWLPSEYG DAVACVCEDG SLSIWEELSE DAHGLEWKLC
101: KSMKNKSSQV LDVQFGVSRK SLKMVAAYSD GYLRVFELLN PLELKNWQLQ AEFQNVIDSL STLGKPSSLS ASVSWNPMKG EEQEPSFVLA FNSDSPHLNS
201: SKIWEFDEAH NRWLAVAELA LPEDKGDPVY ALSWAPNIGR PYEVVAVATH KGIGIWHVGL APDLEGRLPV KKVSSLSGHQ GEVWQMEWDM SGMTLASTGS
301: DGMVKLWQSN LNGEWHEQAT LEPVPS

Arabidopsis Description

SEH1Protein SEH1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VR9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.